Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5771 84.2 2e-11 >seq5771 Length=11851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGAT 139635 ||||| ||||||||||| || |||| || | || || || || || ||||| |||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCA-TCCTCAAGTTGCTTTCCAGCGAAGAT 7577 Query 139636 CAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTT 139694 || |||||| ||||| || || || || || ||||| ||| | || || || | | | Sbjct 7578 CAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTC-TTGAATCTTGGTCTTGACATTGT 7636 Query 139695 CCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGA 139754 | | ||||||| || || ||||||| ||| | ||||| || ||||| || || |||| Sbjct 7637 CGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGA 7696 Query 139755 ATATTTGCATAGCTTAT 139771 | | |||| | |||| Sbjct 7697 AGCTATGCAAATATTAT 7713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496018455124000