Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4887 320 2e-82 seq4745 132 7e-26 >seq4887 Length=16554 Score = 320 bits (354), Expect = 2e-82 Identities = 1322/2064 (64%), Gaps = 47/2064 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||| || ||||| || | | ||||| |||||||||||||| || || ||| Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | ||||||| |||||||| || | ||| | || || || Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | | Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || | ||| | |||||||||| ||| || || | ||| | || |||| | | Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764 Query 78958 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | || ||||| |||||||| || || || || | ||||| || | ||| | Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | | ||| ||| | | || || || || || ||||| || ||||| Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | || || | || | || || || || ||||| || | |||| || || Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||||| || || ||||||||||| || || | ||||| || | || ||| Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACCA 11524 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 | | |||| | || || ||||||||||| ||||| | || |||| | Sbjct 11523 TGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACACCC 11464 Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGT 79314 || | ||||||||| || ||| || | | || ||| ||| || ||||| || Sbjct 11463 CACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATATGGG 11404 Query 79315 CCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAA 79374 || || | ||| | | | | || || || |||| || ||||| |||||| Sbjct 11403 CCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAA 11344 Query 79375 ATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGA-ATAAA 79433 |||| | || |||| || || || | ||| ||||| || | ||| | || Sbjct 11343 ATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGCCAGGAA 11285 Query 79434 CGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTC 79493 || || || | || |||||||||| | | ||||||| || | ||| || Sbjct 11284 GGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCT 11225 Query 79494 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTAC 79553 ||||||||| | |||||| || || || || ||||| || || | || ||||| | || Sbjct 11224 AGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAAC 11165 Query 79554 TTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATC-----TATT-ACAAACAT 79607 || || || || | || || | |||||| | ||| || | || ||||| | Sbjct 11164 TTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGACAAAGGT 11105 Query 79608 GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 79667 | || | ||| |||| ||||| || ||||||| | | | |||| | Sbjct 11104 TGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGAC 11045 Query 79668 TATTTCAGTGCAGAGGTTA---CTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTT 79724 ||||| ||||| | ||| |||| || || || | || | ||| |||||||| Sbjct 11044 GATTTCTGTGCACAAGTTGGAGCTACGG---ATTGTGCCGAGGTTCTTTTGGTTACTCTT 10988 Query 79725 TTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTAT 79784 |||||| || ||||| || ||||| ||||| || | ||||| ||| |||| | || | Sbjct 10987 TTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAG 10928 Query 79785 AATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GACTTGTATCTCTTTTCTCTTT 79840 || | | ||| | | ||||||| || | ||| | || || | ||| | Sbjct 10927 GATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTTACCT----TGTCTCT 10872 Query 79841 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATT 79900 |||| | ||| | ||||| || || || | ||||| | || || ||||||| Sbjct 10871 CGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACATT 10812 Query 79901 CGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATC 79958 ||| ||| ||||| | | ||| ||||| | || ||| || || ||||| |||||||| Sbjct 10811 CGTTAGGGCACATGAGTGTCCAGTCTCCGT--TCTTTTCAACACGCTTCATGAAGAGATC 10754 Query 79959 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 |||||||| || || ||| || ||||| | | |||| ||||| || || |||| Sbjct 10753 TGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCT 10695 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 || || || | |||| | | | ||| | |||||| ||||| | ||| | ||| | Sbjct 10694 TTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATG 10635 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || || || ||||| || || || || | |||||||||||||| || |||||| | Sbjct 10634 CACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAA 10575 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| ||||| || || |||| || || || | || ||| ||| | |||| Sbjct 10574 GCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCAC 10515 Query 80198 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257 | || | || ||||| || || || || | || || || | || || | Sbjct 10514 GGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCT 10455 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317 | || ||||||||||| || || || ||||| || |||| | || || || || | Sbjct 10454 TCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATG 10395 Query 80318 ACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 | | | ||| | || ||| |||||| || | || ||||||||||| ||||| Sbjct 10394 AAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAG 10339 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432 |||| | |||| | ||||| || || || || ||| ||||| || | ||||| Sbjct 10338 TATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGAAT 10280 Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492 || || || |||||||| | ||| || || || | |||| | | || | | Sbjct 10279 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGACG 10220 Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552 | | ||| ||| || | ||| || || || || || | ||| |||||||| || Sbjct 10219 GAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTGTC 10160 Query 80553 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGTGATA 80610 |||| || | |||||||||| ||| || | | |||| |||| | ||| | | Sbjct 10159 ATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT--TC 10103 Query 80611 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 80669 |||| ||| || ||||| | | |||||||| ||||| |||| | ||| || Sbjct 10102 CTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCGCT 10043 Query 80670 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGC 80729 || || | ||| | || || |||| ||||| ||||| || || || || | || Sbjct 10042 AATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGAGC 9983 Query 80730 GGCTAAAATGGCATAATCTGGATG 80753 |||| ||||||||| || ||||| Sbjct 9982 AGCTAGAATGGCATAGTCGGGATG 9959 >seq4745 Length=15183 Score = 132 bits (146), Expect = 7e-26 Identities = 301/453 (66%), Gaps = 0/453 (0%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||| || ||||||||| || || || || || ||||| || || || || ||| | Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 | || || ||||||||||| || || ||||||| |||| || | | || Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTACC 8797 Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835 | || || | | || ||||| || || || ||| ||||||| || | || Sbjct 8798 AAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTT 8857 Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895 ||| || | || | ||||||||| | || | |||||||| ||||| || || Sbjct 8858 CATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGC 8917 Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 49955 ||||| |||| | ||||| || || || || ||||| || || || | Sbjct 8918 CTCTGTAATAACATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAGAG 8977 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || || ||||| ||| || ||||||||||| | || || ||||||||||| || Sbjct 8978 CAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGT 9037 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075 ||| || | ||| | ||||||||| || ||||| || || || || || || ||| || Sbjct 9038 GAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAA 9097 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||| ||||| || || || || || || || Sbjct 9098 GAAGATACCTTCAACGGCAGCGAATGCGACGAG 9130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718202853945800