Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 320 2e-82
seq4745 132 7e-26
>seq4887
Length=16554
Score = 320 bits (354), Expect = 2e-82
Identities = 1322/2064 (64%), Gaps = 47/2064 (2%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
||||||||||| || ||||| || | | ||||| |||||||||||||| || || |||
Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| | ||||||| |||||||| || | ||| | || || ||
Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | |
Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| | ||| | |||||||||| ||| || || | ||| | || |||| | |
Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764
Query 78958 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | | || ||||| |||||||| || || || || | ||||| || | ||| |
Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704
Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074
|| | | | ||| ||| | | || || || || || ||||| || |||||
Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644
Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134
| || || | || | || || || || ||||| || | |||| || ||
Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584
Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194
| |||||||| || || ||||||||||| || || | ||||| || | || |||
Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACCA 11524
Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254
| | |||| | || || ||||||||||| ||||| | || |||| |
Sbjct 11523 TGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACACCC 11464
Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGT 79314
|| | ||||||||| || ||| || | | || ||| ||| || ||||| ||
Sbjct 11463 CACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATATGGG 11404
Query 79315 CCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAA 79374
|| || | ||| | | | | || || || |||| || ||||| ||||||
Sbjct 11403 CCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAA 11344
Query 79375 ATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGA-ATAAA 79433
|||| | || |||| || || || | ||| ||||| || | ||| | ||
Sbjct 11343 ATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGCCAGGAA 11285
Query 79434 CGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTC 79493
|| || || | || |||||||||| | | ||||||| || | ||| ||
Sbjct 11284 GGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCT 11225
Query 79494 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTAC 79553
||||||||| | |||||| || || || || ||||| || || | || ||||| | ||
Sbjct 11224 AGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAAC 11165
Query 79554 TTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATC-----TATT-ACAAACAT 79607
|| || || || | || || | |||||| | ||| || | || ||||| |
Sbjct 11164 TTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGACAAAGGT 11105
Query 79608 GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 79667
| || | ||| |||| ||||| || ||||||| | | | |||| |
Sbjct 11104 TGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGAC 11045
Query 79668 TATTTCAGTGCAGAGGTTA---CTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTT 79724
||||| ||||| | ||| |||| || || || | || | ||| ||||||||
Sbjct 11044 GATTTCTGTGCACAAGTTGGAGCTACGG---ATTGTGCCGAGGTTCTTTTGGTTACTCTT 10988
Query 79725 TTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTAT 79784
|||||| || ||||| || ||||| ||||| || | ||||| ||| |||| | || |
Sbjct 10987 TTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAG 10928
Query 79785 AATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GACTTGTATCTCTTTTCTCTTT 79840
|| | | ||| | | ||||||| || | ||| | || || | ||| |
Sbjct 10927 GATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTTACCT----TGTCTCT 10872
Query 79841 CGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATT 79900
|||| | ||| | ||||| || || || | ||||| | || || |||||||
Sbjct 10871 CGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACATT 10812
Query 79901 CGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATC 79958
||| ||| ||||| | | ||| ||||| | || ||| || || ||||| ||||||||
Sbjct 10811 CGTTAGGGCACATGAGTGTCCAGTCTCCGT--TCTTTTCAACACGCTTCATGAAGAGATC 10754
Query 79959 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017
|||||||| || || ||| || ||||| | | |||| ||||| || || ||||
Sbjct 10753 TGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCT 10695
Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077
|| || || | |||| | | | ||| | |||||| ||||| | ||| | ||| |
Sbjct 10694 TTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATG 10635
Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137
| || || || ||||| || || || || | |||||||||||||| || |||||| |
Sbjct 10634 CACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAA 10575
Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197
||| |||| ||||| || || |||| || || || | || ||| ||| | ||||
Sbjct 10574 GCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCAC 10515
Query 80198 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 80257
| || | || ||||| || || || || | || || || | || || |
Sbjct 10514 GGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCT 10455
Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317
| || ||||||||||| || || || ||||| || |||| | || || || || |
Sbjct 10454 TCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATG 10395
Query 80318 ACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
| | | ||| | || ||| |||||| || | || ||||||||||| |||||
Sbjct 10394 AAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAG 10339
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAAT 80432
|||| | |||| | ||||| || || || || ||| ||||| || | |||||
Sbjct 10338 TATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGAAT 10280
Query 80433 TCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTT 80492
|| || || |||||||| | ||| || || || | |||| | | || | |
Sbjct 10279 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGACG 10220
Query 80493 CAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 80552
| | ||| ||| || | ||| || || || || || | ||| |||||||| ||
Sbjct 10219 GAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTGTC 10160
Query 80553 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGTGATA 80610
|||| || | |||||||||| ||| || | | |||| |||| | ||| | |
Sbjct 10159 ATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT--TC 10103
Query 80611 CTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 80669
|||| ||| || ||||| | | |||||||| ||||| |||| | ||| ||
Sbjct 10102 CTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCGCT 10043
Query 80670 CATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGC 80729
|| || | ||| | || || |||| ||||| ||||| || || || || | ||
Sbjct 10042 AATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGAGC 9983
Query 80730 GGCTAAAATGGCATAATCTGGATG 80753
|||| ||||||||| || |||||
Sbjct 9982 AGCTAGAATGGCATAGTCGGGATG 9959
>seq4745
Length=15183
Score = 132 bits (146), Expect = 7e-26
Identities = 301/453 (66%), Gaps = 0/453 (0%)
Strand=Plus/Plus
Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715
|||||| || ||||||||| || || || || || ||||| || || || || ||| |
Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737
Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775
| || || ||||||||||| || || ||||||| |||| || | | ||
Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTACC 8797
Query 49776 CAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 49835
| || || | | || ||||| || || || ||| ||||||| || | ||
Sbjct 8798 AAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTT 8857
Query 49836 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 49895
||| || | || | ||||||||| | || | |||||||| ||||| || ||
Sbjct 8858 CATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGC 8917
Query 49896 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 49955
||||| |||| | ||||| || || || || ||||| || || || |
Sbjct 8918 CTCTGTAATAACATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAGAG 8977
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
|| || ||||| ||| || ||||||||||| | || || ||||||||||| ||
Sbjct 8978 CAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGT 9037
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAA 50075
||| || | ||| | ||||||||| || ||||| || || || || || || ||| ||
Sbjct 9038 GAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAA 9097
Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108
|||||| ||||| || || || || || || ||
Sbjct 9098 GAAGATACCTTCAACGGCAGCGAATGCGACGAG 9130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718202853945800
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