Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4745 93.3 4e-14 >seq4745 Length=15183 Score = 93.3 bits (102), Expect = 4e-14 Identities = 207/303 (68%), Gaps = 11/303 (4%) Strand=Plus/Plus Query 14097 GTTTCAATAGCATTAAATAAATATTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAA 14154 || ||||||||||| || | |||| ||| | || | ||||| |||||||||| | Sbjct 9260 GTATCAATAGCATTGAAGAGATATGTCTTTTGAGCTTGTTCCTTGA--TGTATGTATCGA 9317 Query 14155 TAAGTAAGCTA-TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 | || |||| | || |||| ||||| ||||||||||| || || ||||| || ||| Sbjct 9318 TGAG-AAGCGAGTATGTTTCCGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAG 9376 Query 14214 CATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAAC 14272 |||| ||||||| |||||| || | | | || | |||| | | |||||||| || Sbjct 9377 CATCGTGCTTCCGGAATTTGTACCTCTCCACT-GAAGCGTTCGACAAGGTTTTCATTGAC 9435 Query 14273 TATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14332 || ||||| || || || ||||| | | || || ||||| |||| || | Sbjct 9436 AATTCCATCGGATGCGGCGAAGAATGCGAGAACGTGAGAGATGAAGTAACGCTCATCGTC 9495 Query 14333 GTTGAGT---TTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14389 |||||| || ||||| ||| | |||||| || | ||| | ||| || | ||||| Sbjct 9496 ATTGAGTCTGTTGTTCCAGTCGTGAAGATCCTTTGACAAATCGATTTCCTCTGCGGTCCA 9555 Query 14390 AAA 14392 || Sbjct 9556 GAA 9558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479683954973000