Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 235 7e-57
seq4745 129 8e-25
>seq4887
Length=16554
Score = 235 bits (260), Expect = 7e-57
Identities = 1303/2065 (63%), Gaps = 49/2065 (2%)
Strand=Plus/Minus
Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860
|| || ||||| || | ||| || || | ||||| ||||||||||| || || || |||
Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944
Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919
|| | ||||||| ||||||||| || | ||| || | |||| || ||
Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTG-TAGGGTCCTTCAT 11885
Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979
||| || ||||| || ||| |||||||||||| || || | |||||| ||||| | |
Sbjct 11884 GTGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAAC 11825
Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039
|| | ||| | |||||||||| ||| || || | ||| | || |||| |
Sbjct 11824 AATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGAT 11765
Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096
||| | | || ||||| |||||||| || || || || | || || || | |||
Sbjct 11764 GTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGA 11705
Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156
||| | | | ||| ||| | | || || || || || ||||| || |||||
Sbjct 11704 CCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 11645
Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216
| || || | ||| | || || || || || || || | | || || ||
Sbjct 11644 GGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACC 11585
Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276
| |||||||| || ||||| |||||||| || || | | ||| || | || |||
Sbjct 11584 GAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC 11525
Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336
|||| ||| | || || ||||||| ||| ||||| | || |||
Sbjct 11524 ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACACC 11465
Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396
|| || | | || ||| | || || || |||||
Sbjct 11464 CCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATATGG 11405
Query 71397 TCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAA 71456
|| | | ||| | | | | || || || || | || ||||| |||||
Sbjct 11404 GCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAA 11345
Query 71457 AATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA-ATAA 71515
||||| | || |||| || || || || ||| ||||| || | ||| | |
Sbjct 11344 AATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGCCAGGA 11286
Query 71516 ACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTT 71575
| || || || | || ||||| |||| | | ||||||| ||| | ||| ||
Sbjct 11285 AGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTC 11226
Query 71576 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTA 71635
||||||||| | |||||| || || || || ||||| || || | |||||||| | |
Sbjct 11225 TAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAA 11166
Query 71636 CTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTAT-TACAAACACG 71691
||| || || || | || || | |||||| | || | || | || | | | | |
Sbjct 11165 CTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGACAAAGG 11106
Query 71692 TTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTA 71749
|| || |||| ||| |||| ||||| || ||||||| | | | |||| |
Sbjct 11105 TTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGA 11046
Query 71750 TAATTTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 71806
||||| ||||| | || |||| ||| || || | || | ||| |||||||
Sbjct 11045 CGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTTACTCT 10989
Query 71807 TTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTA 71866
||||||| || ||||| || ||||| || || || | ||||| ||| |||| | || |
Sbjct 10988 TTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAA 10929
Query 71867 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT----CTTGTATCTCTTTTCTCTT 71922
|| | | ||| | | ||||||| || | || | | || || | |||
Sbjct 10928 GGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTTACCT----TGTCTC 10873
Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982
||||| | ||| | ||||| || || || | ||| | || || ||||||
Sbjct 10872 TCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACAT 10813
Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGAT 72040
|| || || ||||| | || ||| ||||| | || ||| || || ||||| |||||||
Sbjct 10812 TCGTTAGGGCACATGAGTGTCCAGTCTCCGT--TCTTTTCAACACGCTTCATGAAGAGAT 10755
Query 72041 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099
| |||||||| || || ||| || ||||| | | |||| ||||| || || |||
Sbjct 10754 CTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTC 10696
Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159
||| || || | |||| | | | ||| | |||||| ||||| | ||| | ||| |
Sbjct 10695 TTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAAT 10636
Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219
| || || || ||||| || || || || | |||||||||||||| || ||||||
Sbjct 10635 GCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGA 10576
Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279
| ||| |||| ||||| || || ||| || || || | || ||| ||| | |||
Sbjct 10575 AGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCA 10516
Query 72280 CGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 72339
|| || || || ||||| || || || || | || || || | || ||
Sbjct 10515 CGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATC 10456
Query 72340 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399
|| || ||||||||||| || || |||||||| ||| |||| | || || || ||
Sbjct 10455 TTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGAT 10396
Query 72400 GACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455
|| | | ||| | || ||| |||||| || | || ||||||||||| |||||
Sbjct 10395 GAAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAA 10340
Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTA 72514
|||| | |||| | ||||| || || || || ||| ||||| || | || |
Sbjct 10339 GTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGAA 10281
Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574
| || || || |||||||| | ||| || || || | |||| | | || | |
Sbjct 10280 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGAC 10221
Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634
| | ||| ||| || | ||| || || || || || | ||| |||||||| |
Sbjct 10220 GGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTGT 10161
Query 72635 CGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCC--ATGGTGAT 72692
| |||| || | || ||||||| ||| || | | |||| | || | ||| | |
Sbjct 10160 CATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT--T 10104
Query 72693 ACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 72751
|||| ||| || ||||| | | |||||||| ||||| |||| | ||| ||
Sbjct 10103 CCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCGC 10044
Query 72752 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGG 72811
|| || | ||| | || || |||| ||||| ||||| || || || || | |
Sbjct 10043 TAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGAG 9984
Query 72812 CGGCTAGAATGGCATAATCTGGATG 72836
| |||||||||||||| || |||||
Sbjct 9983 CAGCTAGAATGGCATAGTCGGGATG 9959
>seq4745
Length=15183
Score = 129 bits (142), Expect = 8e-25
Identities = 299/449 (67%), Gaps = 4/449 (1%)
Strand=Plus/Plus
Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820
|||||| || ||||||||| || || || || || ||||| || || ||||| ||| |
Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737
Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880
| || || ||||||||||| || || ||||||| |||| || | | ||
Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTACC 8797
Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940
| || || | | ||||||| ||| || || ||| ||||||| || | ||
Sbjct 8798 AAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTT 8857
Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000
||| || | || | ||||||||| | || | |||||||| ||||| ||| ||
Sbjct 8858 CATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGC 8917
Query 42001 GTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 42058
||||| |||| | || | || | || || || || ||| | || || ||
Sbjct 8918 CTCTGTAATAACA--TCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAG 8975
Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118
| || || ||||| ||| || |||||||| || | || | |||||||||||
Sbjct 8976 AGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAG 9035
Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178
||||| || | ||| | ||||||||| || ||||| || ||||| || || || |||
Sbjct 9036 GTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTG 9095
Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGC 42207
|||||||| ||||| || || || || ||
Sbjct 9096 AAGAAGATACCTTCAACGGCAGCGAATGC 9124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671077581032200
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