Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4887 235 7e-57 seq4745 129 8e-25 >seq4887 Length=16554 Score = 235 bits (260), Expect = 7e-57 Identities = 1303/2065 (63%), Gaps = 49/2065 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || ||||| || | ||| || || | ||||| ||||||||||| || || || ||| Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGCTAGGATCGGCTAT 70919 || | ||||||| ||||||||| || | ||| || | |||| || || Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTG-TAGGGTCCTTCAT 11885 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||| || ||||| || ||| |||||||||||| || || | |||||| ||||| | | Sbjct 11884 GTGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAAC 11825 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || | ||| | |||||||||| ||| || || | ||| | || |||| | Sbjct 11824 AATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGAT 11765 Query 71040 GTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 ||| | | || ||||| |||||||| || || || || | || || || | ||| Sbjct 11764 GTTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGA 11705 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| | | | ||| ||| | | || || || || || ||||| || ||||| Sbjct 11704 CCAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCC 11645 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 | || || | ||| | || || || || || || || | | || || || Sbjct 11644 GGCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACC 11585 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 | |||||||| || ||||| |||||||| || || | | ||| || | || ||| Sbjct 11584 GAGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC 11525 Query 71277 ATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNN 71336 |||| ||| | || || ||||||| ||| ||||| | || ||| Sbjct 11524 ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACACC 11465 Query 71337 NNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGG 71396 || || | | || ||| | || || || ||||| Sbjct 11464 CCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATATGG 11405 Query 71397 TCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAA 71456 || | | ||| | | | | || || || || | || ||||| ||||| Sbjct 11404 GCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAA 11345 Query 71457 AATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA-ATAA 71515 ||||| | || |||| || || || || ||| ||||| || | ||| | | Sbjct 11344 AATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGCCAGGA 11286 Query 71516 ACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTT 71575 | || || || | || ||||| |||| | | ||||||| ||| | ||| || Sbjct 11285 AGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTC 11226 Query 71576 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTA 71635 ||||||||| | |||||| || || || || ||||| || || | |||||||| | | Sbjct 11225 TAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAA 11166 Query 71636 CTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTAT-TACAAACACG 71691 ||| || || || | || || | |||||| | || | || | || | | | | | Sbjct 11165 CTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGACAAAGG 11106 Query 71692 TTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTA 71749 || || |||| ||| |||| ||||| || ||||||| | | | |||| | Sbjct 11105 TTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGA 11046 Query 71750 TAATTTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 71806 ||||| ||||| | || |||| ||| || || | || | ||| ||||||| Sbjct 11045 CGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTTACTCT 10989 Query 71807 TTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTA 71866 ||||||| || ||||| || ||||| || || || | ||||| ||| |||| | || | Sbjct 10988 TTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAA 10929 Query 71867 TAATCGCTTTCCAGACGACTCGAGCCTTTATTATATT----CTTGTATCTCTTTTCTCTT 71922 || | | ||| | | ||||||| || | || | | || || | ||| Sbjct 10928 GGATGGAATACCAAAGCTTTTGAGCCTTGATGGTCTTACGACCTTTACCT----TGTCTC 10873 Query 71923 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982 ||||| | ||| | ||||| || || || | ||| | || || |||||| Sbjct 10872 TCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACAT 10813 Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGAT 72040 || || || ||||| | || ||| ||||| | || ||| || || ||||| ||||||| Sbjct 10812 TCGTTAGGGCACATGAGTGTCCAGTCTCCGT--TCTTTTCAACACGCTTCATGAAGAGAT 10755 Query 72041 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 | |||||||| || || ||| || ||||| | | |||| ||||| || || ||| Sbjct 10754 CTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTC 10696 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 ||| || || | |||| | | | ||| | |||||| ||||| | ||| | ||| | Sbjct 10695 TTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAAT 10636 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || || || || | |||||||||||||| || |||||| Sbjct 10635 GCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGA 10576 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| ||||| || || ||| || || || | || ||| ||| | ||| Sbjct 10575 AGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCA 10516 Query 72280 CGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 72339 || || || || ||||| || || || || | || || || | || || Sbjct 10515 CGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATC 10456 Query 72340 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || || ||||||||||| || || |||||||| ||| |||| | || || || || Sbjct 10455 TTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGAT 10396 Query 72400 GACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 72455 || | | ||| | || ||| |||||| || | || ||||||||||| ||||| Sbjct 10395 GAAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAA 10340 Query 72456 CCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGTA 72514 |||| | |||| | ||||| || || || || ||| ||||| || | || | Sbjct 10339 GTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGAA 10281 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || || || |||||||| | ||| || || || | |||| | | || | | Sbjct 10280 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGAC 10221 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 | | ||| ||| || | ||| || || || || || | ||| |||||||| | Sbjct 10220 GGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTGT 10161 Query 72635 CGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCC--ATGGTGAT 72692 | |||| || | || ||||||| ||| || | | |||| | || | ||| | | Sbjct 10160 CATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT--T 10104 Query 72693 ACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCT 72751 |||| ||| || ||||| | | |||||||| ||||| |||| | ||| || Sbjct 10103 CCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCGC 10044 Query 72752 CCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGG 72811 || || | ||| | || || |||| ||||| ||||| || || || || | | Sbjct 10043 TAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGAG 9984 Query 72812 CGGCTAGAATGGCATAATCTGGATG 72836 | |||||||||||||| || ||||| Sbjct 9983 CAGCTAGAATGGCATAGTCGGGATG 9959 >seq4745 Length=15183 Score = 129 bits (142), Expect = 8e-25 Identities = 299/449 (67%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||| || ||||||||| || || || || || ||||| || || ||||| ||| | Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 | || || ||||||||||| || || ||||||| |||| || | | || Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTACC 8797 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 | || || | | ||||||| ||| || || ||| ||||||| || | || Sbjct 8798 AAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTT 8857 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||| || | || | ||||||||| | || | |||||||| ||||| ||| || Sbjct 8858 CATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGC 8917 Query 42001 GTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 42058 ||||| |||| | || | || | || || || || ||| | || || || Sbjct 8918 CTCTGTAATAACA--TCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAG 8975 Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 | || || ||||| ||| || |||||||| || | || | ||||||||||| Sbjct 8976 AGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAG 9035 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA 42178 ||||| || | ||| | ||||||||| || ||||| || ||||| || || || ||| Sbjct 9036 GTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTG 9095 Query 42179 AAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 |||||||| ||||| || || || || || Sbjct 9096 AAGAAGATACCTTCAACGGCAGCGAATGC 9124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671077581032200