Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4745 127 3e-24
seq1649 87.8 3e-12
>seq4745
Length=15183
Score = 127 bits (140), Expect = 3e-24
Identities = 190/267 (71%), Gaps = 2/267 (1%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||| ||||| ||||| | || || ||||| ||
Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|| ||||| || |||| ||| | | | | | ||| |||||| | || || ||
Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCATCTCT 9472
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197
||| || | || ||||| |||| ||||||||||| ||||| || || | ||| || |||
Sbjct 9471 CACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGA-ACG 9413
Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257
||| | |||| | ||||| || | ||||| ||||| ||||||||||||||
Sbjct 9412 CTTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATGAT 9353
Query 125258 TGAGAACGTGCACTCGGAAATGTACTC 125284
|| ||| | |||||||||| |||||
Sbjct 9352 GGAAAACATCCACTCGGAAACATACTC 9326
>seq1649
Length=6120
Score = 87.8 bits (96), Expect = 3e-12
Identities = 179/258 (69%), Gaps = 6/258 (2%)
Strand=Plus/Minus
Query 70033 TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATT 70092
||| ||||| ||||| || | || | |||| ||||||||||| || || || || ||
Sbjct 5746 TTTAGATTCAATCGGCCTCTCGCACCGCGAAGAAGGCGATCTGGGCCCCGTATATGGCTT 5687
Query 70093 CCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGC-GAGACAGACTATTCGGGTCAGG 70151
|| ||| |||| | ||| ||| |||||| || ||| | ||| || ||| |||||||||
Sbjct 5686 TCAATGGCGGCATTTCGGCGCCACGTATGTGGA-TGCTGCGACGGATTATACGGGTCAGG 5628
Query 70152 GTGTTGATCAATT-GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGG 70210
| || ||||| || ||||| | ||| | | | |||| ||||| ||| | |||
Sbjct 5627 GCGTCGATCAGTTGGCAGAGGTTATTTGGAAAT-TGAAGAATAATCCGTGGGATCGCAGG 5569
Query 70211 ATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCA- 70269
|| | || | | |||||| || ||| | | | ||||| |||| || |||||
Sbjct 5568 ATTATTTTGAGTGCGTGGAATGTGGCGGATATTAAGCTGATGGCGTTACCGCCTTGTCAT 5509
Query 70270 CTGTTTGGCTCAGTTTTA 70287
||||| || ||||||||
Sbjct 5508 ATGTTT-GCGCAGTTTTA 5492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740991161502200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |