Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4745 127 3e-24 seq1649 87.8 3e-12 >seq4745 Length=15183 Score = 127 bits (140), Expect = 3e-24 Identities = 190/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| ||||| ||||| | || || ||||| || Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||| || |||| ||| | | | | | ||| |||||| | || || || Sbjct 9531 TCAAAGGATCTTCACGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCATCTCT 9472 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||| || | || ||||| |||| ||||||||||| ||||| || || | ||| || ||| Sbjct 9471 CACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGA-ACG 9413 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| | |||| | ||||| || | ||||| ||||| |||||||||||||| Sbjct 9412 CTTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATGAT 9353 Query 125258 TGAGAACGTGCACTCGGAAATGTACTC 125284 || ||| | |||||||||| ||||| Sbjct 9352 GGAAAACATCCACTCGGAAACATACTC 9326 >seq1649 Length=6120 Score = 87.8 bits (96), Expect = 3e-12 Identities = 179/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 70033 TTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATT 70092 ||| ||||| ||||| || | || | |||| ||||||||||| || || || || || Sbjct 5746 TTTAGATTCAATCGGCCTCTCGCACCGCGAAGAAGGCGATCTGGGCCCCGTATATGGCTT 5687 Query 70093 CCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGC-GAGACAGACTATTCGGGTCAGG 70151 || ||| |||| | ||| ||| |||||| || ||| | ||| || ||| ||||||||| Sbjct 5686 TCAATGGCGGCATTTCGGCGCCACGTATGTGGA-TGCTGCGACGGATTATACGGGTCAGG 5628 Query 70152 GTGTTGATCAATT-GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGG 70210 | || ||||| || ||||| | ||| | | | |||| ||||| ||| | ||| Sbjct 5627 GCGTCGATCAGTTGGCAGAGGTTATTTGGAAAT-TGAAGAATAATCCGTGGGATCGCAGG 5569 Query 70211 ATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCA- 70269 || | || | | |||||| || ||| | | | ||||| |||| || ||||| Sbjct 5568 ATTATTTTGAGTGCGTGGAATGTGGCGGATATTAAGCTGATGGCGTTACCGCCTTGTCAT 5509 Query 70270 CTGTTTGGCTCAGTTTTA 70287 ||||| || |||||||| Sbjct 5508 ATGTTT-GCGCAGTTTTA 5492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740991161502200