Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq894 111 1e-19
seq5062 89.7 4e-13
seq5771 82.4 6e-11
>seq894
Length=6424
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || | |||| || ||||| ||||||||||| ||| |||| | || ||
Sbjct 3229 ACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCC 3288
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| || |||||| | ||||| |||||||||||| ||| || || || |||||
Sbjct 3289 AATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGG 3348
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| || |||| || | || |||||||| ||| || ||||| ||||| || ||
Sbjct 3349 ATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTT 3408
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| |||| ||| || ||||| ||||||||
Sbjct 3409 CCAGTCAAAGTCTTAACAAAGATTTGCAT 3437
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| ||||| | || || || ||||| |||||||| || || | | | || ||
Sbjct 3456 AACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTC 3515
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| || || |||||| | || | ||||||||| || |||||| ||||| |||||
Sbjct 3516 CAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTG 3575
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||||||||||| | || || ||||| || || || || || || || ||
Sbjct 3576 AATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTT 3635
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || || ||||| ||||||
Sbjct 3636 TCCGGTAAGAGTCTTGACGAAAATCTGCATA 3666
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| | | ||| | ||| ||||| | || || || || || |||||||| |||
Sbjct 3667 CCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 3726
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | |||| || | ||| ||||||||| | |||||||||||||| || ||
Sbjct 3727 AGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGG 3786
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| || || || || ||| ||| |||| ||| | || || ||||| | ||| ||
Sbjct 3787 ATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACC 3846
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTAC 15351
|| | || || || || || || ||||| || ||
Sbjct 3847 TCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGAC 3881
>seq5062
Length=19932
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||| || || || || || |||||||||||| ||| | | | |||||
Sbjct 11096 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 11155
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| ||||| ||| | || | ||||||||| || ||| ||||| || || ||
Sbjct 11156 AGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGG 11215
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| | || ||| | || || || ||| || || |||| ||| |||||||||
Sbjct 11216 ATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTA 11275
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || || || || |||||
Sbjct 11276 CCCGTGAGGGTCTTGACGAAGATCTGCAT 11304
>seq5771
Length=11851
Score = 82.4 bits (90), Expect = 6e-11
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 15176 TTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15235
||||| ||||| ||||| | | | | | || || | ||| || |||||| | |||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 15236 AAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCT 15295
||||||||||| || |||||||| || ||||| ||| ||| |||| ||| | ||
Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638
Query 15296 ATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15355
||||| ||| ||| || || | ||| ||||| ||||| |||| || || || ||
Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAG 7698
Query 15356 ATTTGCATAT 15365
| |||| ||
Sbjct 7699 CTATGCAAAT 7708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362146778736645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |