Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq894 125 2e-23
seq5062 122 2e-22
>seq894
Length=6424
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|| || || || | |||||| || ||||| ||||| || || ||||| || ||||| |
Sbjct 3676 AGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 3735
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
||||| || ||||| || ||||| || || | | ||||||||||| || || || ||
Sbjct 3736 CCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCC 3795
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||| |||||||| | || ||||| || | ||||| || ||| ||||| || ||
Sbjct 3796 TTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTG 3855
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553
|||||||| || || || || || || | |||
Sbjct 3856 ATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| || ||||| || || || || ||||||||||| || || | ||| |||||||| |||
Sbjct 3247 TCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAA 3306
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | ||||| || || || || || || || || || ||||||| || || ||
Sbjct 3307 ATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTA 3366
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | |||||| | ||| ||||||| ||||| ||||| ||||| | || || |||
Sbjct 3367 TCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3426
Query 104549 AATATCTGCATT 104560
|| || ||||||
Sbjct 3427 AAGATTTGCATT 3438
Score = 107 bits (118), Expect = 4e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| || | |||||| || || || || ||||| || |||||
Sbjct 3436 ATTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCC 3495
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || || || | || || ||||| || || || | |||||||||||
Sbjct 3496 GACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGT 3555
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508
|| || ||||| || || |||||| ||||| ||||| || || | ||||| | ||
Sbjct 3556 GGAATGCCTTCCTTGTCTTGAATC-TTGCTCTTTACGTTGTCGATAGTATCAGATGACTC 3614
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| | || || ||||| || ||||| || || || || ||||||||
Sbjct 3615 AACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
>seq5062
Length=19932
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || ||||| | || ||||| ||||| || ||
Sbjct 11108 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCG 11167
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || ||||| | ||||||||||| || ||||| || |||||||| ||||| | |||
Sbjct 11168 GCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTG 11227
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || ||| | || |||||||| || || || ||||| || || ||
Sbjct 11228 ACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTC 11287
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 11288 TTGACGAAGATCTGCAT 11304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151290044415260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |