Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq894 125 2e-23 seq5062 122 2e-22 >seq894 Length=6424 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || | |||||| || ||||| ||||| || || ||||| || ||||| | Sbjct 3676 AGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGG 3735 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||| || ||||| || || | | ||||||||||| || || || || Sbjct 3736 CCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCC 3795 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| |||||||| | || ||||| || | ||||| || ||| ||||| || || Sbjct 3796 TTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTG 3855 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATAT 104553 |||||||| || || || || || || | ||| Sbjct 3856 ATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || || || || ||||||||||| || || | ||| |||||||| ||| Sbjct 3247 TCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAA 3306 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||||| || || || || || || || || || ||||||| || || || Sbjct 3307 ATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTA 3366 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| | ||| ||||||| ||||| ||||| ||||| | || || ||| Sbjct 3367 TCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3426 Query 104549 AATATCTGCATT 104560 || || |||||| Sbjct 3427 AAGATTTGCATT 3438 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | |||||| || || || || ||||| || ||||| Sbjct 3436 ATTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCC 3495 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || | || || ||||| || || || | ||||||||||| Sbjct 3496 GACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGT 3555 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| || || |||||| ||||| ||||| || || | ||||| | || Sbjct 3556 GGAATGCCTTCCTTGTCTTGAATC-TTGCTCTTTACGTTGTCGATAGTATCAGATGACTC 3614 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| || ||||| || || || || |||||||| Sbjct 3615 AACCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 >seq5062 Length=19932 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || ||||| | || ||||| ||||| || || Sbjct 11108 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCG 11167 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || ||||| | ||||||||||| || ||||| || |||||||| ||||| | ||| Sbjct 11168 GCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTG 11227 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| | || |||||||| || || || ||||| || || || Sbjct 11228 ACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTC 11287 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 11288 TTGACGAAGATCTGCAT 11304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151290044415260