Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6332 127 3e-25 seq6715 113 7e-21 >seq6332 Length=4819 Score = 127 bits (140), Expect = 3e-25 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| ||||| ||| |||||| ||||||| || || |||| ||| | Sbjct 4452 TGATCTACGAAGAGACTCGTGGTGTATTGAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 4511 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||||||||||||||| || || |||||||||||||| | ||| |||| || | Sbjct 4512 CCGTCACCTATACCGAGCACGCCAAGCGCAAGACTGTCACCTCTCTCGATGTCGTATACG 4571 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||||| | |||||||||| |||| ||||| || |||| Sbjct 4572 CATTGAAGAGACAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 4614 Score = 87.8 bits (96), Expect = 3e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||| |||||| | ||||| |||||||||||||| | Sbjct 4274 GAGACAACATCCAAGGTATCACAAAGCCTGCTATCAGACGTCTCGCTCGTCGTGGTGGTG 4333 Query 16518 TCAAGCGT 16525 |||||||| Sbjct 4334 TCAAGCGT 4341 >seq6715 Length=3864 Score = 113 bits (124), Expect = 7e-21 Identities = 86/99 (87%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| |||| |||||| || ||||||||||| ||||| ||||| ||||| Sbjct 716 GCTAAGCGTCATCGCAAGAT-TCTTCGCGACAACATCCAAGGTATCACAAAGCCTGCTAT 774 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 | | ||||| || ||||||||||| ||||||||| |||| Sbjct 775 CAGACGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068484415085