Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq6332 127 3e-25
seq6715 113 7e-21
>seq6332
Length=4819
Score = 127 bits (140), Expect = 3e-25
Identities = 126/163 (77%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| ||||| ||| |||||| ||||||| || || |||| ||| |
Sbjct 4452 TGATCTACGAAGAGACTCGTGGTGTATTGAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 4511
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||||||||||||||| || || |||||||||||||| | ||| |||| || |
Sbjct 4512 CCGTCACCTATACCGAGCACGCCAAGCGCAAGACTGTCACCTCTCTCGATGTCGTATACG 4571
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
||||||| | |||||||||| |||| ||||| || ||||
Sbjct 4572 CATTGAAGAGACAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 4614
Score = 87.8 bits (96), Expect = 3e-13
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||| ||||||||||| ||||| ||||| |||||| | ||||| |||||||||||||| |
Sbjct 4274 GAGACAACATCCAAGGTATCACAAAGCCTGCTATCAGACGTCTCGCTCGTCGTGGTGGTG 4333
Query 16518 TCAAGCGT 16525
||||||||
Sbjct 4334 TCAAGCGT 4341
>seq6715
Length=3864
Score = 113 bits (124), Expect = 7e-21
Identities = 86/99 (87%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||||||||| |||| |||||| || ||||||||||| ||||| ||||| |||||
Sbjct 716 GCTAAGCGTCATCGCAAGAT-TCTTCGCGACAACATCCAAGGTATCACAAAGCCTGCTAT 774
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| || ||||||||||| ||||||||| ||||
Sbjct 775 CAGACGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 813
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79068484415085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |