Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4887 288 1e-72 seq4745 143 3e-29 >seq4887 Length=16554 Score = 288 bits (318), Expect = 1e-72 Identities = 1314/2066 (64%), Gaps = 51/2066 (2%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||||||||| || ||||| || | | ||||| |||||||||||||| || || ||| Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | ||||||| ||||||||| || | ||| | || || || Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | | Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || | ||| | |||||||||| ||| || || | ||| | || |||| | | Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764 Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | | || ||||| |||||||| || || || || | ||||| || | ||| | Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | | ||| ||| | | || || || || || ||||| || ||||| Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | || || | || | || || || || || || || | | || || || Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | |||||||| || ||||| |||||||| || || | ||||| || | || ||| Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC- 11525 Query 62472 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 ||||| |||| | || || ||||||| ||| ||||| | || ||| Sbjct 11524 -ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACAC 11466 Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 62585 ||| || ||| || ||||| | || || | || || || Sbjct 11465 CCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAAC----CTTCGTAGGTCTCA 11410 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 ||||| || || || || | | | | || || ||||||| || ||||| Sbjct 11409 TATGGGCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTC 11350 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62705 ||||| |||| | || |||| || || || | ||| ||||| || | ||| Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGC 11291 Query 62706 -ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764 | || || || || | || |||||||||| | | ||||||| || | ||| Sbjct 11290 CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACT 11231 Query 62765 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62824 || ||||||||| | |||||| || || || || ||||| || || | |||||||| Sbjct 11230 CTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171 Query 62825 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATT---AC 62878 || |||| || || || | || || | |||||| | || | || | || || Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGAC 11111 Query 62879 AAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62938 ||| | | |||| ||| |||| ||||| || ||||||| | | | || Sbjct 11110 AAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTA 11051 Query 62939 TTGTATTATCTCAGTGCAAAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 || | || || ||||| | || |||| ||| || || | || | ||| || Sbjct 11050 TTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTT 10994 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 |||||||||||| || ||||| || ||||| ||||| || | ||||| ||| |||| | Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934 Query 63056 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC--CTTTCT 63113 || | || | | ||| | | ||||||| || | || | || | || | Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTC--TTACGACCTTTACCTTGT 10876 Query 63114 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 || ||||| | ||| | ||||| || || || | |||| |||| || ||| Sbjct 10875 CTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGA 10816 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 ||||| | || ||||| | | ||| ||||||| | | || || ||||| |||||| Sbjct 10815 CATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 10756 Query 63234 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63292 || |||||||| || || ||| || ||||| | | |||| |||||| || || || Sbjct 10755 TCTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTT 10697 Query 63293 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63352 |||| || || | |||| | | | ||| | |||||| ||||| | ||| | ||| | Sbjct 10696 CTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAA 10637 Query 63353 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63412 | ||||| || ||||| || || || || | |||||||||||||| || |||||| Sbjct 10636 TGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCG 10577 Query 63413 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC 63472 | ||| |||| |||||||| || |||| || || || | || ||| ||| | || Sbjct 10576 AAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGC 10517 Query 63473 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63532 ||| || | || ||||| || || || || | || || || | || || Sbjct 10516 ACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAAT 10457 Query 63533 TTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 || || || ||||||||||| || || ||||| || |||| | || || || || Sbjct 10456 CTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGA 10397 Query 63593 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648 || | | ||| | || ||| |||||| || | || ||||||||||| |||| Sbjct 10396 TGAAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAA 10341 Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63707 | |||| | || | | ||||| || || || || || ||||| || | ||| Sbjct 10340 AGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGA 10282 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 || || || || |||||||| | ||| || || || | |||| | | || || | Sbjct 10281 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGA 10222 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827 | | ||| ||| || | ||| || || || || || | ||| |||||||| Sbjct 10221 CGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTG 10162 Query 63828 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCC--ATGGTGA 63885 || |||| || | |||||||||| ||| || | | |||| | || | ||| | Sbjct 10161 TCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT-- 10105 Query 63886 TACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCC 63944 | |||| ||| || ||||| | | |||||||| ||||| |||| | ||| || Sbjct 10104 TCCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCG 10045 Query 63945 TCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTG 64004 || || | ||| | || || |||| ||||| ||||| || || || || | Sbjct 10044 CTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGA 9985 Query 64005 GCGGCTAGAATGGCATAATCCGGATG 64030 || |||||||||||||| || ||||| Sbjct 9984 GCAGCTAGAATGGCATAGTCGGGATG 9959 >seq4745 Length=15183 Score = 143 bits (158), Expect = 3e-29 Identities = 300/447 (67%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| || ||||||||| || || || || || ||||| || || || || ||| | Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 | || || ||||||||||| || || ||||||| |||| || | | || Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTACC 8797 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 | || || | | || |||||||| || || ||| ||||||| || | || Sbjct 8798 AAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTT 8857 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || | || | ||||||||| | || | |||||||| ||||| || || Sbjct 8858 CATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGC 8917 Query 33240 ATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACAT 33299 ||||| |||| | ||||| || || || || ||||| || || || | Sbjct 8918 CTCTGTAATAACATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAGAG 8977 Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || || ||||| ||| || ||||||||||| | || || ||||||||||| || Sbjct 8978 CAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGT 9037 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| || | ||| | ||||||||| || ||||| || || || ||||| || ||| || Sbjct 9038 GAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAA 9097 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGC 33446 |||||| ||||| || ||||| || || Sbjct 9098 GAAGATACCTTCAACGGCAGCGAATGC 9124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622890005660200