Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4887 356 6e-93 seq4745 127 5e-24 seq4570 84.2 6e-11 >seq4887 Length=16554 Score = 356 bits (394), Expect = 6e-93 Identities = 1173/1793 (65%), Gaps = 48/1793 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||||| ||||| | ||| ||| ||||| ||| || | || || ||| |||| Sbjct 10184 TTCGGATTCAAGACTCTTGAGCGATCATACCTCCTCCGTCTCGACGGAAATGTTGCTGAA 10243 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || || || ||| | ||||||||||| ||||||| || | ||| |||| Sbjct 10244 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGT 10303 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568 || || |||||||| || ||| | || | | || || || ||||| | |||||| Sbjct 10304 GCCATCGAAACATACAA-CTTG-ATGTCCAACAAATACTTTACACACGCTTCTCCAACAC 10361 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | | ||| || |||| | | ||| | || || ||||| ||| | | ||||||| Sbjct 10362 TCTTCTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGG 10421 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | ||| || || ||||||| ||| || | |||| ||||||| | ||||| ||||| | Sbjct 10422 AGGATAGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACG 10481 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGT---TACATTCGC 363744 | || || |||||| | ||||||| | ||||| || | || |||||| Sbjct 10482 CTGGTGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTG----GTGCCTACATTGCA 10537 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 |||||| || |||| || || | ||||| |||||||| || || |||| || || Sbjct 10538 GGCACAAACGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCT 10597 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 || || |||||||| ||||| |||||| || || ||||| | || || || || Sbjct 10598 AGATATGTCGACCAAGGTGGTAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCA 10657 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 ||||| ||| | |||||||| | || ||||| || ||| || ||||||||| | Sbjct 10658 TGGCATGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTT 10717 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 | ||||| ||||| |||||||| || ||| || | || | || |||||||| || || Sbjct 10718 AGAGCACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAA 10777 Query 363985 GCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 || || | ||| ||||| | ||||| ||||||||||||| | | ||||| | Sbjct 10778 A-AGAACGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTA 10836 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGA-ATCGGAGGGAAAGGCTCGTAAGA 364102 ||||| || | | ||||| || ||| || || | ||| ||||| |||||||| Sbjct 10837 TGGTGATGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGG-TCGTAAGA 10895 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || || || ||||| |||| | ||||| | || | |||| |||||| |||| || Sbjct 10896 CCATCAAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAA-AC 10954 Query 364163 CCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221 ||| | ||| | ||||||||| | |||||| ||| ||||| || |||| || ||| Sbjct 10955 CCTTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACA 11014 Query 364222 ATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 | || | || |||| | || || || || | |||||| | || || || ||| ||| Sbjct 11015 A-TCCGTAGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGC 11073 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA------AGATGGTACTTT 364334 |||||| | || || || || || || | ||||| || || || |||| Sbjct 11074 TTGCTGTAACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAACATGGCTGAGGGAACTTA 11133 Query 364335 TGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC--AATCTCG-ACAAGGT 364391 ||| ||| | ||| |||| || | ||| | | | | || || | ||||| | Sbjct 11134 TGATTTCCAAAAGCTTCATGAGGT---CGTTCAAGTTGTTGTCAGAAACTTGAACAAGAT 11190 Query 364392 TATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCC 364450 ||| |||| || || ||||| | || ||||| || | ||| | ||||| || | Sbjct 11191 TATTGACATCAACTACTATCCTGTCCCAGAAGCTAGAAAG-AGTAACTTCCGTCACCGAC 11249 Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510 | |||| | ||||||| ||||| || ||||| | || || ||| || |||| | Sbjct 11250 CTATTGCTGTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGCCATTCG 11309 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 |||| ||||| || ||| || | |||| || || || || || | || Sbjct 11310 ATTCACCTGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGCCT 11369 Query 364571 TGACTGCTTCGTGT---GATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627 ||||| | || ||| |||| || || ||| || || || || || | Sbjct 11370 TGACTTCGTC-TGTTCAGATT--GCCAAGGAGTTGGGCCCATATGAGACCTACGAAGGTT 11426 Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGAT 364687 | || |||| |||| || | || | |||| | ||| ||| || || | | | | Sbjct 11427 CTCCAGTTTCCAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATCTCT 11486 Query 364688 GGAACTGGGATACGCTACGTTCCAAC-GTTAAGAAGCATGGTACTCGCAAC---TCCCTC 364743 || | ||||||| || | | | | | ||| | ||||||| ||||||| | || Sbjct 11487 GGGATTGGGATA-GCCTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTT 11545 Query 364744 GTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTC 364803 ||| || || ||||| || || ||| | || || ||||| |||||| || ||| Sbjct 11546 GTT---GCTCCTATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTC 11602 Query 364804 GAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTT 364863 || || | || ||| | ||||| || || || || ||||||| || | || || Sbjct 11603 GAGCCATACACTTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTC 11662 Query 364864 AATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923 || | || |||||||| | |||| || || ||| ||||| |||||||||| Sbjct 11663 AACCCATGGCTTCTCAAGGATTTGGTCGACATGGGACTTTGGTCTGACAACATGAAGAAC 11722 Query 364924 TATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAG 364983 |||||||| | ||| ||| | || |||||||| | |||| || || ||| Sbjct 11723 CGCATCATCGCTGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAG 11782 Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGAT 365043 || | ||||| || || |||||||| || |||| | || | ||||| || || Sbjct 11783 GCTCTCTACAAGACTGTTTGGGAAATCTCTCAACGAAACATTGTTCAGATGGCCGCAGAC 11842 Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103 || |||||||| ||| ||| || || | ||| | ||||| | || || Sbjct 11843 CGTGGTGCTTTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATG 11902 Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| | || ||||||||||| || ||||||| ||||| ||||| || Sbjct 11903 GGCAAGATCACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGG 11955 >seq4745 Length=15183 Score = 127 bits (140), Expect = 5e-24 Identities = 360/544 (66%), Gaps = 12/544 (2%) Strand=Plus/Minus Query 22414 ATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT 22473 ||| |||| ||| | |||||||| ||||| || ||||| | | |||||| | || Sbjct 9214 ATTTGCACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGAT 9155 Query 22474 --GAACGTT-CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTT 22530 |||| | | || || ||||||| | ||||| |||| |||||||| || ||||| Sbjct 9154 AAGAACTCTACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTC 9095 Query 22531 TCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACG 22590 ||| | || | || || ||||| || || |||| | ||| | ||||| || Sbjct 9094 AGTGGTTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACC 9035 Query 22591 TTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTA 22650 ||||| || ||| | || ||| || ||||||||||||||||| || || || |||| Sbjct 9034 TTTTCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTC 8975 Query 22651 TA-TCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAA 22709 | ||| | | | ||| || || | || | || | ||| |||||||| | Sbjct 8974 TTCTCGCACTTGAAGCATCGCCCAAG---CAAAC-AAGCCGTTCAGGATGTTATTACAGA 8919 Query 22710 TGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTAT 22769 || || | |||| | ||| | || || | ||| |||| |||| || Sbjct 8918 GGCTGTCCAGATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCAT 8859 Query 22770 CAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACT 22829 || | || | |||| ||| ||| | || || ||||| ||||| | || | || Sbjct 8858 GAACTCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCT 8799 Query 22830 CGGTTATGCAAAGCATTATAACG-TC-GTTAATCCATTTGAATGGATGGAACTTATTTCA 22887 ||| ||| ||| ||| || || | |||||||| || | |||||| ||||| Sbjct 8798 TGGTAATGAGAAGGTTTAC--CGATCAGCCAATCCATTCGACTTCATGGAAAACATTTCT 8741 Query 22888 CTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTT 22947 || | ||| |||||||| |||||||| || ||||||| || ||||||||||| |||||| Sbjct 8740 CTCGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTACCAAAAAGCTGGTGTT 8681 Query 22948 ATGG 22951 |||| Sbjct 8680 ATGG 8677 >seq4570 Length=38393 Score = 84.2 bits (92), Expect = 6e-11 Identities = 123/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 65848 AACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACATATTATCT 65907 || ||||||| ||| | | ||| || | || ||||| || || |||| ||| Sbjct 2206 AATTGCACGATATCTCCGAGAGAGTTTCGCACAGTGCCGTCGTACTTAGCCATAACATCC 2147 Query 65908 TCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTT--GCAGTTTTTACCGCGG 65965 ||| ||||| || |||| ||||||||| ||||| ||||| ||||||||||| || | Sbjct 2146 TCAAGGGCCTTGACGAGACGACGCTGGATATAACC--TGTTTCGGCAGTTTTTACTGCAG 2089 Query 65966 TATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAAAACTCAGTCGG 66017 |||||| | ||||||||| || | ||| || ||||| || ||||| || Sbjct 2088 TATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTTGG 2037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303230944243790