Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 356 6e-93
seq4745 127 5e-24
seq4570 84.2 6e-11
>seq4887
Length=16554
Score = 356 bits (394), Expect = 6e-93
Identities = 1173/1793 (65%), Gaps = 48/1793 (3%)
Strand=Plus/Plus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||||| ||||| | ||| ||| ||||| ||| || | || || ||| ||||
Sbjct 10184 TTCGGATTCAAGACTCTTGAGCGATCATACCTCCTCCGTCTCGACGGAAATGTTGCTGAA 10243
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
|| || || || ||| | ||||||||||| ||||||| || | ||| ||||
Sbjct 10244 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGT 10303
Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568
|| || |||||||| || ||| | || | | || || || ||||| | ||||||
Sbjct 10304 GCCATCGAAACATACAA-CTTG-ATGTCCAACAAATACTTTACACACGCTTCTCCAACAC 10361
Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628
| | | ||| || |||| | | ||| | || || ||||| ||| | | |||||||
Sbjct 10362 TCTTCTCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGG 10421
Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688
| ||| || || ||||||| ||| || | |||| ||||||| | ||||| ||||| |
Sbjct 10422 AGGATAGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACG 10481
Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGT---TACATTCGC 363744
| || || |||||| | ||||||| | ||||| || | || ||||||
Sbjct 10482 CTGGTGGTATTGGTCTCAACATCCACAGAATCCGTGCTACTG----GTGCCTACATTGCA 10537
Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804
|||||| || |||| || || | ||||| |||||||| || || |||| || ||
Sbjct 10538 GGCACAAACGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCT 10597
Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864
|| || |||||||| ||||| |||||| || || ||||| | || || || ||
Sbjct 10598 AGATATGTCGACCAAGGTGGTAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCA 10657
Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924
||||| ||| | |||||||| | || ||||| || ||| || ||||||||| |
Sbjct 10658 TGGCATGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTT 10717
Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984
| ||||| ||||| |||||||| || ||| || | || | || |||||||| || ||
Sbjct 10718 AGAGCACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAA 10777
Query 363985 GCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043
|| || | ||| ||||| | ||||| ||||||||||||| | | ||||| |
Sbjct 10778 A-AGAACGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTA 10836
Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAAGTATGA-ATCGGAGGGAAAGGCTCGTAAGA 364102
||||| || | | ||||| || ||| || || | ||| ||||| ||||||||
Sbjct 10837 TGGTGATGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGG-TCGTAAGA 10895
Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162
| || || || ||||| |||| | ||||| | || | |||| |||||| |||| ||
Sbjct 10896 CCATCAAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAA-AC 10954
Query 364163 CCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACA 364221
||| | ||| | ||||||||| | |||||| ||| ||||| || |||| || |||
Sbjct 10955 CCTTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACA 11014
Query 364222 ATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280
| || | || |||| | || || || || | |||||| | || || || ||| |||
Sbjct 11015 A-TCCGTAGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGC 11073
Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA------AGATGGTACTTT 364334
|||||| | || || || || || || | ||||| || || || ||||
Sbjct 11074 TTGCTGTAACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAACATGGCTGAGGGAACTTA 11133
Query 364335 TGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGC--AATCTCG-ACAAGGT 364391
||| ||| | ||| |||| || | ||| | | | | || || | ||||| |
Sbjct 11134 TGATTTCCAAAAGCTTCATGAGGT---CGTTCAAGTTGTTGTCAGAAACTTGAACAAGAT 11190
Query 364392 TATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCC 364450
||| |||| || || ||||| | || ||||| || | ||| | ||||| || |
Sbjct 11191 TATTGACATCAACTACTATCCTGTCCCAGAAGCTAGAAAG-AGTAACTTCCGTCACCGAC 11249
Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510
| |||| | ||||||| ||||| || ||||| | || || ||| || |||| |
Sbjct 11250 CTATTGCTGTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGCCATTCG 11309
Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570
|||| ||||| || ||| || | |||| || || || || || | ||
Sbjct 11310 ATTCACCTGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGCCT 11369
Query 364571 TGACTGCTTCGTGT---GATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627
||||| | || ||| |||| || || ||| || || || || || |
Sbjct 11370 TGACTTCGTC-TGTTCAGATT--GCCAAGGAGTTGGGCCCATATGAGACCTACGAAGGTT 11426
Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGAT 364687
| || |||| |||| || | || | |||| | ||| ||| || || | | | |
Sbjct 11427 CTCCAGTTTCCAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATCTCT 11486
Query 364688 GGAACTGGGATACGCTACGTTCCAAC-GTTAAGAAGCATGGTACTCGCAAC---TCCCTC 364743
|| | ||||||| || | | | | | ||| | ||||||| ||||||| | ||
Sbjct 11487 GGGATTGGGATA-GCCTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTT 11545
Query 364744 GTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTC 364803
||| || || ||||| || || ||| | || || ||||| |||||| || |||
Sbjct 11546 GTT---GCTCCTATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTC 11602
Query 364804 GAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTT 364863
|| || | || ||| | ||||| || || || || ||||||| || | || ||
Sbjct 11603 GAGCCATACACTTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTC 11662
Query 364864 AATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAAC 364923
|| | || |||||||| | |||| || || ||| ||||| ||||||||||
Sbjct 11663 AACCCATGGCTTCTCAAGGATTTGGTCGACATGGGACTTTGGTCTGACAACATGAAGAAC 11722
Query 364924 TATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAG 364983
|||||||| | ||| ||| | || |||||||| | |||| || || |||
Sbjct 11723 CGCATCATCGCTGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAG 11782
Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGAT 365043
|| | ||||| || || |||||||| || |||| | || | ||||| || ||
Sbjct 11783 GCTCTCTACAAGACTGTTTGGGAAATCTCTCAACGAAACATTGTTCAGATGGCCGCAGAC 11842
Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCC 365103
|| |||||||| ||| ||| || || | ||| | ||||| | || ||
Sbjct 11843 CGTGGTGCTTTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATG 11902
Query 365104 GCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| |||| | || ||||||||||| || ||||||| ||||| ||||| ||
Sbjct 11903 GGCAAGATCACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGG 11955
>seq4745
Length=15183
Score = 127 bits (140), Expect = 5e-24
Identities = 360/544 (66%), Gaps = 12/544 (2%)
Strand=Plus/Minus
Query 22414 ATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT 22473
||| |||| ||| | |||||||| ||||| || ||||| | | |||||| | ||
Sbjct 9214 ATTTGCACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGAT 9155
Query 22474 --GAACGTT-CATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTT 22530
|||| | | || || ||||||| | ||||| |||| |||||||| || |||||
Sbjct 9154 AAGAACTCTACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTC 9095
Query 22531 TCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACG 22590
||| | || | || || ||||| || || |||| | ||| | ||||| ||
Sbjct 9094 AGTGGTTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACC 9035
Query 22591 TTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTA 22650
||||| || ||| | || ||| || ||||||||||||||||| || || || ||||
Sbjct 9034 TTTTCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTC 8975
Query 22651 TA-TCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAA 22709
| ||| | | | ||| || || | || | || | ||| |||||||| |
Sbjct 8974 TTCTCGCACTTGAAGCATCGCCCAAG---CAAAC-AAGCCGTTCAGGATGTTATTACAGA 8919
Query 22710 TGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTAT 22769
|| || | |||| | ||| | || || | ||| |||| |||| ||
Sbjct 8918 GGCTGTCCAGATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCAT 8859
Query 22770 CAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACT 22829
|| | || | |||| ||| ||| | || || ||||| ||||| | || | ||
Sbjct 8858 GAACTCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCT 8799
Query 22830 CGGTTATGCAAAGCATTATAACG-TC-GTTAATCCATTTGAATGGATGGAACTTATTTCA 22887
||| ||| ||| ||| || || | |||||||| || | |||||| |||||
Sbjct 8798 TGGTAATGAGAAGGTTTAC--CGATCAGCCAATCCATTCGACTTCATGGAAAACATTTCT 8741
Query 22888 CTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTT 22947
|| | ||| |||||||| |||||||| || ||||||| || ||||||||||| ||||||
Sbjct 8740 CTCGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTACCAAAAAGCTGGTGTT 8681
Query 22948 ATGG 22951
||||
Sbjct 8680 ATGG 8677
>seq4570
Length=38393
Score = 84.2 bits (92), Expect = 6e-11
Identities = 123/172 (72%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 65848 AACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACATATTATCT 65907
|| ||||||| ||| | | ||| || | || ||||| || || |||| |||
Sbjct 2206 AATTGCACGATATCTCCGAGAGAGTTTCGCACAGTGCCGTCGTACTTAGCCATAACATCC 2147
Query 65908 TCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTT--GCAGTTTTTACCGCGG 65965
||| ||||| || |||| ||||||||| ||||| ||||| ||||||||||| || |
Sbjct 2146 TCAAGGGCCTTGACGAGACGACGCTGGATATAACC--TGTTTCGGCAGTTTTTACTGCAG 2089
Query 65966 TATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAAAACTCAGTCGG 66017
|||||| | ||||||||| || | ||| || ||||| || ||||| ||
Sbjct 2088 TATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTTGG 2037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303230944243790
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