Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5062 89.7 4e-13 seq894 86.0 5e-12 >seq5062 Length=19932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| | || ||| | || |||||| || | Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| ||||| || || || || || || || |||||| Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | || |||||||||||||||||||| | | | | |||||| ||| Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || || || || |||| || || Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGT 11096 >seq894 Length=6424 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || |||||||| | ||||| | || || || | Sbjct 3438 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTC 3379 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | ||||| |||||| ||||| || ||||| || ||||| || Sbjct 3378 AGATACCATTGATAACGTCAAGACAAAGATCCAAGACAAGGAGGGCATCCCACCCGACCA 3319 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||||| || || |||||| | || |||| |||| | ||||| || Sbjct 3318 ACAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACAA 3259 Query 24170 CATTCAAAAAGA 24181 ||||||||| || Sbjct 3258 CATTCAAAAGGA 3247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429897513338475