Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14 140 2e-28 seq894 104 2e-17 seq5062 102 5e-17 seq5771 84.2 1e-11 >seq14 Length=13360 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2648 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2589 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2588 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2554 >seq894 Length=6424 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | |||||| || | ||||||||||||||||| |||||||| || Sbjct 3211 CCACCACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAA 3270 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || || ||||| ||||| || || || | |||||||| |||| ||| Sbjct 3271 AGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGG 3330 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || ||||| || ||| ||| || || | | |||||| ||| || Sbjct 3331 ATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACC 3390 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| || || || ||||| || || || || || ||||| Sbjct 3391 TCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||| | ||| |||||||||||| ||||| || |||| ||| | || || Sbjct 3457 ACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCC 3516 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 || || || || || || || || ||||||||||| | || | |||||| ||||| | Sbjct 3517 AACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGA 3576 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | || |||||| ||||| || || || || || || Sbjct 3577 ATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTTT 3636 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || ||||| |||||||| Sbjct 3637 CCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 >seq5062 Length=19932 Score = 102 bits (112), Expect = 5e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38100 AAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGT 38159 ||||||| ||||| |||||||| |||||| || || |||||||| || | | || Sbjct 11087 AAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGG 11146 Query 38160 TCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCT 38219 | || || | ||| || ||||| || ||||| ||||||||||| | |||| || || Sbjct 11147 CCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCC 11206 Query 38220 TTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTA 38279 || ||| || || || ||||| | || ||| || || || |||| || Sbjct 11207 TTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTG 11266 Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||||||||| | ||| || ||||| ||||||||| Sbjct 11267 ATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 11305 >seq5771 Length=11851 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 38128 CCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATA 38187 ||||||| || || |||||||||||| ||| | || || | ||| ||||| || || | Sbjct 7517 CCTTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 7576 Query 38188 TTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 | | ||||||||||| | ||| | || || ||||| ||| || ||| ||||| | Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 7636 Query 38248 GGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA 38307 || || || ||| || || | || || || |||||||||||||| || |||| Sbjct 7637 CGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGA 7696 Query 38308 ATATCTGCA 38316 | | |||| Sbjct 7697 AGCTATGCA 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334917216468695