Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4887 315 9e-81 seq4745 129 7e-25 >seq4887 Length=16554 Score = 315 bits (348), Expect = 9e-81 Identities = 1320/2066 (64%), Gaps = 51/2066 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||||||||| || ||||| || | | ||||| |||||||||||||| || || ||| Sbjct 12003 GTGAATTGAATTGGTGCGGAAGCAGCCATAGTACGGAGATAGTACATTCCAGTCTTGAGA 11944 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | ||||||| ||||||||| || | ||| | || || || Sbjct 11943 CCTAATTTCCATCCAGCAAAATGCATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATG 11884 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 ||||| ||||| |||||| |||||||||||| || || | |||||| ||||| | | | Sbjct 11883 TGGATGTTCATTGATTGAGATTGATCGATGAAAGCACCACGGTCTGCGGCCATCTGAACA 11824 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || | ||| | |||||||||| ||| || || | ||| | || |||| | | Sbjct 11823 ATGTTTCGTTGAGAGATTTCCCAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATG 11764 Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 || | | || ||||| |||||||| || || || || | ||||| || | ||| | Sbjct 11763 TTGGGAATGTTTTGAATAGATCCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGAC 11704 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || | | | ||| ||| | | || || || || || ||||| || ||||| Sbjct 11703 CAAAGTCCCATGTCGACCAAATCCTTGAGAAGCCATGGGTTGACAACTTGGAACTCTCCG 11644 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 | || || | || | || || || || || || || | | | || || || Sbjct 11643 GCCAGCACACGACGGGAATAGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCG 11584 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 | |||||||| || ||||| |||||||| || || | ||||| || | || ||| Sbjct 11583 AGAATTTGAGATGTACTGGCAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACC- 11525 Query 62327 TATGTTC--TGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62384 ||||| |||| | || || ||||||| ||| ||||| | || ||| Sbjct 11524 -ATGTTGCTTGATAGATTGCTTGAGGCTATCCCAATCCCAGAGATCTGTAGGAGTAACAC 11466 Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTACATATGTATCG 62440 ||| || ||| || ||||| | || || | || || || Sbjct 11465 CCCACATATCATATTGAAGTTCACCCTTGGAAACTGGAGAAC----CTTCGTAGGTCTCA 11410 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 ||||| || || || || | | | | || || ||||||| || ||||| Sbjct 11409 TATGGGCCCAACTCCTTGGCAATCTGAACAGACGAAGTCAAGGCACCGTGGTAGATGGTC 11350 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560 ||||| |||| | || |||| || || || | ||| ||||| || | ||| Sbjct 11349 TCGAAAATCTGGATGTTAAGATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGA-GAGC 11291 Query 62561 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62619 | || || || || | || |||||||||| | | ||||||| || | ||| Sbjct 11290 CAGGAAGGCATCAGCAAGACCCTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACT 11231 Query 62620 GATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGAC 62679 || ||||||||| | |||||| || || || || ||||| || || | |||||||| Sbjct 11230 CTTTCTAGCTTCTGGGACAGGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGAC 11171 Query 62680 AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATT---AC 62733 || |||| || || || | || || | |||||| | || | || | || || Sbjct 11170 AACAACTTGAACGACCTCATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGAC 11111 Query 62734 AAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATA 62793 ||| | | |||| ||| |||| ||||| || ||||||| | | | || Sbjct 11110 AAAGGTTGGGAGAGCAATAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTA 11051 Query 62794 TTGTATTATCTCAGTGCAAAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 || | || || ||||| | || |||| ||| || || | || | ||| || Sbjct 11050 TTCGACGATTTCTGTGCACAAGTTGGAGCTACG---GATTGTGCCGAGGTTCTTTTGGTT 10994 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 |||||||||||| || ||||| || ||||| ||||| || | ||||| ||| |||| | Sbjct 10993 ACTCTTTTTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGC 10934 Query 62911 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCT 62968 || | || | | ||| | | ||||||| || | || | || | || | Sbjct 10933 CTCAAGGATGGAATACCAAAGCTTTTGAGCCTTGATGGTC--TTACGACCTTTACCTTGT 10876 Query 62969 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 || ||||| | ||| | ||||| || || || | |||| ||| || ||| Sbjct 10875 CTCTCGTAACCTTCATAGAGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGA 10816 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63088 ||||| | || ||||| | | ||| ||||||| | | || || ||||| |||||| Sbjct 10815 CATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGA 10756 Query 63089 TCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147 || |||||||| || || ||| || ||||| | | |||| |||||| || || || Sbjct 10755 TCTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTT 10697 Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207 |||| || || | |||| | | | ||| | |||||| ||||| | ||| | ||| | Sbjct 10696 CTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAA 10637 Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267 | ||||| || ||||| || || || || | |||||||||||||| || |||||| Sbjct 10636 TGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCG 10577 Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 | ||| |||| ||||| || || |||| || || |||| || ||| ||| | || Sbjct 10576 AAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGC 10517 Query 63328 ACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 63387 ||| || | || ||||| || || || || | || || || | || || Sbjct 10516 ACGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAAT 10457 Query 63388 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 || || ||||||||||| || || |||||||| ||| |||| | || || || || Sbjct 10456 CTTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGA 10397 Query 63448 AGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAA 63503 || | | ||| | || ||| |||||| || | || ||||||||||| |||| Sbjct 10396 TGAAA---GCTGA-GCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAA 10341 Query 63504 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGA 63562 | |||| | || | | ||||| || || || || || ||||| || | ||| Sbjct 10340 AGTATTTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGA 10282 Query 63563 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 || || || || |||||||| | ||| || || || | |||| | | || || | Sbjct 10281 ATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGA 10222 Query 63623 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63682 | | ||| ||| || | ||| || || || || || | ||| |||||||| Sbjct 10221 CGGAGGAGGTATGATCGCTCAAGAGTCTTGAATCCGAAGTATTGGTAGTTAAAGTCTCTG 10162 Query 63683 TCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCC--ATGGTAA 63740 || |||| || | |||||||||| ||| || | | |||| |||| | ||| | Sbjct 10161 TCATAAACGATTGCAGAGTTGAGTTCTGCCTCATGTCTCATAAC-ACATTCGTATGTT-- 10105 Query 63741 TACTTG-AAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCC 63799 | |||| ||| |||||| | | | |||||||| ||||| |||| | ||| || Sbjct 10104 TCCTTGCTAATCATAGGAGATTTGGTGCCATTTTTGGGATTCGTGTAGTGGTATAGGTCG 10045 Query 63800 TCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859 || || | ||| | || || |||| |||||| ||||| || || || || | | Sbjct 10044 CTAATGACATGGGAGAATTGCTTCTTGGTTTGTTTGTGAAGATTGGAGACTGCAATACGA 9985 Query 63860 GCGGCTAGAATGGCATAATCCGGATG 63885 || |||||||||||||| || ||||| Sbjct 9984 GCAGCTAGAATGGCATAGTCGGGATG 9959 >seq4745 Length=15183 Score = 129 bits (142), Expect = 7e-25 Identities = 299/449 (67%), Gaps = 4/449 (1%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||| || ||||||||| || || || || || ||||| || || || || ||| | Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | || || ||||||||||| ||||||||||||| |||| || | | || Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAACCTTCTCATTACC 8797 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 | || || | | |||||||| || || || ||| ||||||| || | || Sbjct 8798 AAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTT 8857 Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 ||| || | || | ||||||||| | || | |||||||| ||||| ||| || Sbjct 8858 CATGCCAAGGAGAGCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGC 8917 Query 32597 GTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAAC 32654 ||||| |||| | || | || | || || || || ||| | || || || Sbjct 8918 CTCTGTAATAACA--TCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAG 8975 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 | || || ||||| ||| || ||||||||||| | || | ||||||||||| Sbjct 8976 AGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAG 9035 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 32774 ||||| || | ||| | ||||||||| || ||||| || || || || || || ||| Sbjct 9036 GTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTG 9095 Query 32775 AAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| || ||||| || || || || || Sbjct 9096 AAGAAGATACCTTCAACGGCAGCGAATGC 9124 Score = 105 bits (116), Expect = 8e-18 Identities = 225/333 (68%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 || || |||||||| |||||||| | |||| | || || | |||||||| || Sbjct 9260 GTATCAATAGCATTGAAGAGATATGTCTTTTGAGCTTGTTCCTTGATGTATGTATCGATG 9319 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 | ||| || ||||||| || |||||||| || ||||| || |||||||||||| Sbjct 9320 AGAAGCGAGTATGTTTCCGAGTGGATGTTTTCCATCATGATTTGGAAACCGTAGAAGCAT 9379 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | || || | ||| ||||| ||| || || ||||| | | |||||||| || ||| Sbjct 9380 CGTGCTTCCGGAATTTGTACCTCTCCACTGAAGCGTTCGACAAGGTTTTCATTGACAATT 9439 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTC-TGG 33118 || || || || || || || | || || || || || | ||||| | | Sbjct 9440 CCATCGGATGCGGCGAAGAATGCGAGAACGTGAGAGATGAAGTAACGCTCATCGTCATTG 9499 Query 33119 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 || | || ||||| || | | ||| || || | ||| | ||| || | ||||| || Sbjct 9500 AGTCTG-TTGTTCCAGTCGTGAAGATCCTTTGACAAATCGATTTCCTCTGCGGTCCAGAA 9558 Query 33179 TGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 |||||||| ||||| || ||||| | |||||| Sbjct 9559 GGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 9591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633573824662000