Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq894 109 5e-19
seq5062 104 2e-17
>seq894
Length=6424
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||||||||| || || | || || | || ||||| |||||
Sbjct 3438 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACAATTACGTTAGAGGTGGAATCGTC 3379
Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || || | || | ||| ||| ||| ||||| || || || ||||| ||||
Sbjct 3378 AGATACCATTGA-TAACGTCAAGACAAAGATCCAAGACAAGGAGGGCATCCCACCCGACC 3320
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | ||||| || || || ||||| || |||| | | ||| | |||||||
Sbjct 3319 AACAACGATTGATTTTCGCTGGAAAGCAATTGGAGGATGGTAGAACTCTTTCGGATTACA 3260
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| |||||||| || ||| | || || |||||
Sbjct 3259 ACATTCAAAAGGAGAGCACCTTGCACTTGGTGCT 3226
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | ||||| || | ||||| | || || ||||| |||
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| |||||||| | ||| || || ||||| ||||| ||||||||||| |||
Sbjct 3605 GATACTATCGACAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAA 3546
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || || || || || || || || |||| || || || || |||||
Sbjct 3545 CAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACAAC 3486
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || || || ||||||| || ||
Sbjct 3485 ATTCAAAAGGAGTCGACTTTACATTTGGTTCT 3454
Score = 96.9 bits (106), Expect = 3e-15
Identities = 134/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
||||| || ||||||| | || || || || || ||||||||||| | |||
Sbjct 4153 ACCGGCAAGACCATCACCCTTGAGGTTGAATCTTCCGACACTATCGACAACGTCAAGACT 4094
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| || || || || ||||| |||||||||||||| | || ||||| |||||
Sbjct 4093 AAGATCCAGGATAAGGAGGGTATTCCTCCTGACCAACAGCGTTTGATCTTTGCTGGCAAG 4034
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||| | || |||| ||| ||| || |||| ||||| || || || || || || || |||
Sbjct 4033 CAACTCGAGGATGGTCGTACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCAT 3974
Query 25203 TTAGTGCT 25210
| || ||
Sbjct 3973 CTCGTCCT 3966
>seq5062
Length=19932
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || |||||| ||||||| | || || ||||| ||
Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| |||| || | || ||| || || || || || ||||||||
Sbjct 11244 GACACTATCGATAATGTCA---AAAC-CAAGATCCAGGATAAGGAGGGAATCCCACCTGA 11189
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | || || |||||||| ||| | ||||||| |||||| | ||||||
Sbjct 11188 TCAACAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTA 11129
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || || || || || || || || ||
Sbjct 11128 CAACATCCAGAAGGAGTCGACTCTTCACTTGGTCCT 11093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433289209696175
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |