Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4745 123 3e-23 >seq4745 Length=15183 Score = 123 bits (136), Expect = 3e-23 Identities = 200/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||||||||| | || || || |||| || |||| || ||||| |||||| Sbjct 9305 ATGTATGTATCGATGAGAAGCGAGTATGTTTCCGAGTGGATGTTTTCCATCATGATTTGG 9364 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| |||| ||||||| || || || ||| | || | || || || Sbjct 9365 AAACCGTAGAAGCATCGTGCTTCCGGAATTTGTACCTCTCCACTGAAGCGTTCGACAAGG 9424 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 ||||||||||| || ||||||||||| || || || || | | || || || | Sbjct 9425 TTTTCATTGACAATTCCATCGGATGCGGCGAAGAATGCGAGAACGTGAGAGATGAAGTAA 9484 Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 |||||| || || || || | ||| ||| ||||| ||||| | ||||| ||| Sbjct 9485 CGCTCATCGTCATTGAGTCTGTTGTTCCAGTCGTGAAGATCCTTTGACAAATCGATTTCC 9544 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || | ||||| || ||||| || || || |||||||| | ||| || Sbjct 9545 TCTGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 9591 Score = 107 bits (118), Expect = 2e-18 Identities = 356/538 (66%), Gaps = 28/538 (5%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| ||||||||| || |||||| || || ||||| || ||||| ||| | Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737 Query 92850 CAAAGATATCGAATTCACT--AGT-GATTGGATT--CTTGGCGTTATAATACTTTTCACC 92904 | ||| || | ||| | ||| || |||||| || || || | ||| ||| Sbjct 8738 GAGAGAAAT-GTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAAC--CTTCTCATT 8794 Query 92905 GATCAACTCGTACAATAAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963 | ||| |||| || | || || || || || ||||| || ||||||||| Sbjct 8795 -ACCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCG 8853 Query 92964 AATTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 | ||||| || || ||| | ||| || ||||| || |||||||| |||| ||| || Sbjct 8854 AGTTCATGCCAAGGAGA-GCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGG 8912 Query 93023 ACGGCTTCTTTCAAGATTTCTATTACT-CTACTAT--TTGG----TGGTTTTTGTACGAC 93075 || || ||| | | | || || || | | |||| || || || ||| Sbjct 8913 ACAGCCTCTGTAATAACATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAG 8972 Query 93076 ATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTC 93135 | | | | ||| || ||||||||||| | ||| ||||| || || || | ||| Sbjct 8973 A-------AGAGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTC 9025 Query 93136 ATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195 ||| || || | ||| | | || || || ||||||||||| || || || || || Sbjct 9026 GTTGGAAAAGGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAA 9085 Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255 |||| || || |||||||| ||||| || ||||| || | ||||| ||||| | Sbjct 9086 GGAACCACTGAAGAAGATACCTTCAACGGCAGCGAATGCGACGAGACGTTGAGCAAAGGT 9145 Query 93256 TGCGGAATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312 | | ||| | || |||||| | | |||||| ||||| || |||||||| ||||| Sbjct 9146 AGAGTTCTTA-TCCTCAATCCATCTAACAGCCCAGTCGGCCTTCTTCTTAATGCAAGG 9202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556809673217800