Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4745 123 3e-23
>seq4745
Length=15183
Score = 123 bits (136), Expect = 3e-23
Identities = 200/287 (70%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|||||||||||||| | || || || |||| || |||| || ||||| ||||||
Sbjct 9305 ATGTATGTATCGATGAGAAGCGAGTATGTTTCCGAGTGGATGTTTTCCATCATGATTTGG 9364
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| |||| ||||||| || || || ||| | || | || || ||
Sbjct 9365 AAACCGTAGAAGCATCGTGCTTCCGGAATTTGTACCTCTCCACTGAAGCGTTCGACAAGG 9424
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
||||||||||| || ||||||||||| || || || || | | || || || |
Sbjct 9425 TTTTCATTGACAATTCCATCGGATGCGGCGAAGAATGCGAGAACGTGAGAGATGAAGTAA 9484
Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
|||||| || || || || | ||| ||| ||||| ||||| | ||||| |||
Sbjct 9485 CGCTCATCGTCATTGAGTCTGTTGTTCCAGTCGTGAAGATCCTTTGACAAATCGATTTCC 9544
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| | ||||| || ||||| || || || |||||||| | ||| ||
Sbjct 9545 TCTGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTACATCTGCCAGAT 9591
Score = 107 bits (118), Expect = 2e-18
Identities = 356/538 (66%), Gaps = 28/538 (5%)
Strand=Plus/Plus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
|||||||||| ||||||||| || |||||| || || ||||| || ||||| ||| |
Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737
Query 92850 CAAAGATATCGAATTCACT--AGT-GATTGGATT--CTTGGCGTTATAATACTTTTCACC 92904
| ||| || | ||| | ||| || |||||| || || || | ||| |||
Sbjct 8738 GAGAGAAAT-GTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAAC--CTTCTCATT 8794
Query 92905 GATCAACTCGTACAATAAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963
| ||| |||| || | || || || || || ||||| || |||||||||
Sbjct 8795 -ACCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCG 8853
Query 92964 AATTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022
| ||||| || || ||| | ||| || ||||| || |||||||| |||| ||| ||
Sbjct 8854 AGTTCATGCCAAGGAGA-GCACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGG 8912
Query 93023 ACGGCTTCTTTCAAGATTTCTATTACT-CTACTAT--TTGG----TGGTTTTTGTACGAC 93075
|| || ||| | | | || || || | | |||| || || || |||
Sbjct 8913 ACAGCCTCTGTAATAACATCCTGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAG 8972
Query 93076 ATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTC 93135
| | | | ||| || ||||||||||| | ||| ||||| || || || | |||
Sbjct 8973 A-------AGAGCAGGCAGGCGAAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTC 9025
Query 93136 ATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAA 93195
||| || || | ||| | | || || || ||||||||||| || || || || ||
Sbjct 9026 GTTGGAAAAGGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAA 9085
Query 93196 ACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATT 93255
|||| || || |||||||| ||||| || ||||| || | ||||| ||||| |
Sbjct 9086 GGAACCACTGAAGAAGATACCTTCAACGGCAGCGAATGCGACGAGACGTTGAGCAAAGGT 9145
Query 93256 TGCGGAATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG 93312
| | ||| | || |||||| | | |||||| ||||| || |||||||| |||||
Sbjct 9146 AGAGTTCTTA-TCCTCAATCCATCTAACAGCCCAGTCGGCCTTCTTCTTAATGCAAGG 9202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556809673217800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |