Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq894 192 1e-43
seq5062 179 7e-40
seq5771 143 5e-29
seq4745 89.7 9e-13
>seq894
Length=6424
Score = 192 bits (212), Expect = 1e-43
Identities = 180/229 (79%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || |||||||| | ||||| |||| || ||||| ||||| ||||| || || |
Sbjct 3437 TTCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCG 3496
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| || || | ||||| || |||||||| || ||||| ||||| | |||||| || ||||
Sbjct 3497 ACAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTG 3556
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
||||||||||||||||||||||||| ||| ||| ||||| || || | ||| || |
Sbjct 3557 GAATGCCTTCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAA 3616
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||| ||||| || ||||| || || ||||||||||| ||||||||
Sbjct 3617 CCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Score = 163 bits (180), Expect = 5e-35
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| | ||| ||| ||||| ||||| ||||| ||
Sbjct 3211 CCACCACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAA 3270
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || || ||||| || || ||||| || ||||| || | || |||||||||||||||
Sbjct 3271 AGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGG 3330
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| ||||||| ||||||| || ||||| |||| ||||| ||
Sbjct 3331 ATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACC 3390
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || || || || ||||| || | ||||| || || || ||||||
Sbjct 3391 TCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3438
Score = 120 bits (132), Expect = 6e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| | || ||||| |||| || || || || |||||||| || |||||
Sbjct 3667 CCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 3726
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| || ||||| || | | |||||| || || ||
Sbjct 3727 AGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGG 3786
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | ||| || ||||| || || | ||||| ||
Sbjct 3787 ATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACC 3846
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455
|| | ||||| || || || ||||| |||||||||| |||
Sbjct 3847 TCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887
>seq5062
Length=19932
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || | |||| |||||||| || || ||||| || |||||||| ||||||||
Sbjct 11078 CCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 11137
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | ||||| |||||||| || || | |||||| || |||||
Sbjct 11138 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGG 11197
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || || ||||| | ||||| ||||| ||||| | || || ||
Sbjct 11198 ATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACC 11257
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 11258 TCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304
>seq5771
Length=11851
Score = 143 bits (158), Expect = 5e-29
Identities = 144/187 (77%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
||||||||||||||||| || | || | ||||| || | ||||| || ||||| ||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
| | |||||| || || ||||| || ||||||||||||||||| | |||||| |||
Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|||||||| | ||||| || || | ||||||||| || ||||| | ||||||||||||
Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAAG 7698
Query 68454 ATCTGCA 68460
| ||||
Sbjct 7699 CTATGCA 7705
>seq4745
Length=15183
Score = 89.7 bits (98), Expect = 9e-13
Identities = 135/190 (71%), Gaps = 4/190 (2%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
||| || || || || ||||| || || || |||||||||||||| |||||| |
Sbjct 8678 CATAACACCAGCTTTTTGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGC 8737
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTT--CTCGGCGCCAAACTGCTTGGGGTAA 10052
||| |||||| ||||||||||| || || || || || |||| ||| | |
Sbjct 8738 GAGAGAAATGTTTTCCATGAAGTCGAATGGATTGGCTGATCGGTAAAC--CTTCTCATTA 8795
Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112
|| || || | || ||||| || |||||||| ||||| || |||||| ||||||
Sbjct 8796 CCAAGAGCAACAAGAAGACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAG 8855
Query 10113 TTCATGCCAA 10122
||||||||||
Sbjct 8856 TTCATGCCAA 8865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921537783543400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |