Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4745 163 5e-35 seq4887 143 5e-29 >seq4745 Length=15183 Score = 163 bits (180), Expect = 5e-35 Identities = 357/519 (69%), Gaps = 17/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 || ||||| ||||||||||| |||||||| | | ||||| ||| | || | || Sbjct 9202 CCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAACTCTACC 9143 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | | | || || || || | ||||| || || ||||||||| || ||||| Sbjct 9142 TTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGTGGTTCCTTC 9083 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 ||||| || |||||||||||| || | | |||| | || |||||||| || ||||| Sbjct 9082 GCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTTTCCAACGAG 9023 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 |||||| | | |||||||| || |||| ||||| |||||||| || |||||| ||| Sbjct 9022 CTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTCTTCTCG---CAC 8966 Query 42873 CTCAGGCACAAGCCC--TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 | | ||| |||| | || ||| || | || | || || ||||| || ||| Sbjct 8965 TTGAAGCA-TCGCCCAAGCAAACAAGC-CGTTCAGGATGTTATTACAGAGGCTGTCCAGA 8908 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGAC 42989 | ||| | || ||| | ||| | | || || ||| | || | ||||||||| || Sbjct 8907 TTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTG-CTCTCCTTGGCATGAACTCGGAT 8849 Query 42990 CTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATC-TCCTGTGCCAGATGGGTCTCA 43047 | ||| |||| ||||| ||| |||||| |||| || || ||| | ||| | | Sbjct 8848 TTGATGAAGCAA-TACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGA 8790 Query 43048 GCCGCCTCTAC--AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGG 43105 | | | ||| | || ||| || |||||||| ||||| ||||| || | | || Sbjct 8789 GAAG-GTTTACCGATCA-GCC-AATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGG 8733 Query 43106 CAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||||||||| ||||||||||| || | ||||||||| Sbjct 8732 CAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTACCA 8694 >seq4887 Length=16554 Score = 143 bits (158), Expect = 5e-29 Identities = 488/758 (64%), Gaps = 12/758 (2%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||| ||| || ||||| |||| | ||| | ||| || || ||||| | | Sbjct 11088 GCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGCACAAG 11029 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || ||| ||||| |||| || || || ||| |||||| || || ||| Sbjct 11028 TTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTG 10969 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || |||||||| || || ||||| |||||| | |||| | | ||| || | Sbjct 10968 TAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTT 10909 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 |||||||| ||| | ||| | || || | | |||||| | || || |||||| Sbjct 10908 TGAGCCTTGATGGTCTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCG 10849 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 || || || |||| || | | ||| || || ||||||||||| |||| Sbjct 10848 AATTCATCACCATAGACATCAGCCAAGCCTGGACATTCGTTAGGGCACATGAGTGTCCAG 10789 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || ||| | | || | || ||||||||| || || ||||||||||| | |||||| Sbjct 10788 TCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGA 10729 Query 245048 TCCCTGGTCCTCT--GCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 || | || |||| || || ||| |||||| | || ||||| || ||||||| Sbjct 10728 TCGC--GTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGA 10671 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || | ||||| || || | ||| || || | || || || |||||||| || || | Sbjct 10670 CATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTT 10611 Query 245166 GGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | || |||| |||||| | || || |||| || || |||||| Sbjct 10610 GGTCGA----CATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTA 10555 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG 245281 |||| ||||| ||||| |||||||| || | | | || || |||| | Sbjct 10554 GAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATGTTGAGA 10495 Query 245282 CCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCC 245341 || | || || |||| ||| || || | || || |||| | || || || || Sbjct 10494 CCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAGATACCA 10435 Query 245342 TCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTG 245401 || || || ||| |||||| | | || ||||| || || ||||| | || || | Sbjct 10434 TCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTGTGGAGTA 10375 Query 245402 CACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | || ||| || || || ||||| |||||||| Sbjct 10374 CCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTA 10337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944252497857200