Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 132 1e-25
seq894 132 1e-25
seq4745 111 4e-19
seq5771 100 7e-16
>seq5062
Length=19932
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || |||| || ||||| || ||||| | ||| || || ||||||
Sbjct 11114 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAG 11173
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| |||||| | ||||||||| || ||||||||||| || | ||| || ||
Sbjct 11174 ATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTA 11233
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| ||| || || || || || ||||| || || || || || |||||||||
Sbjct 11234 TCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACG 11293
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 11294 AAGATCTGCAT 11304
>seq894
Length=6424
Score = 132 bits (146), Expect = 1e-25
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| || || | ||| | || ||| || ||||| || |||||||
Sbjct 3667 CCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 3726
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | ||| || || |||||||||| ||| |||||| | |||
Sbjct 3727 AGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGG 3786
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| || || || | || || || || |||| ||| ||||| ||
Sbjct 3787 ATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACC 3846
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467
|| || ||||| ||||| ||||| ||||||||||||| |||
Sbjct 3847 TCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887
Score = 118 bits (130), Expect = 3e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||| || || | ||| || | ||| | || || ||||| || || ||||| |
Sbjct 3438 TCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGA 3497
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || || || || || || || || || |||||||| ||||| |||||| | |||
Sbjct 3498 CAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGG 3557
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTA 288424
|| ||||| || || || || || ||| || ||||| || |||| ||| || || |
Sbjct 3558 AATGCCTTCCTTGTCTTGAATCTT-GCTCTTTACGTTGTCGATAGTATCAGATGACTCAA 3616
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || | ||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 3617 CCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Score = 87.8 bits (96), Expect = 4e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| |||||||| | || || || ||||| || |||||| | || || || ||
Sbjct 3966 AGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCC 4025
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381
|| | ||| || || || ||||||| ||||||||| | || || || || ||||||
Sbjct 4026 TCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATCC 4085
Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441
||||| || | || ||||| || |||| ||| ||||| || || || ||||| |||
Sbjct 4086 TGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTC 4145
Query 288442 TTCCCGGT 288449
|| |||||
Sbjct 4146 TTGCCGGT 4153
>seq4745
Length=15183
Score = 111 bits (122), Expect = 4e-19
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190
|| ||| | |||||| || | | || ||||| | ||| | ||||| ||||| || ||
Sbjct 8887 GAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTGATGAAGCAATACATTGAG 8828
Query 269191 TTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGA 269248
||||| || || ||| |||| | || || ||| ||||||| || ||| || |
Sbjct 8827 TTCGTCGCAGACCGT--CTTCTTGTTGCTCTTGGTAATGAGAAGGTTTACCGATCAGCCA 8770
Query 269249 ATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGC 269308
|||| |||| ||| |||||| ||||| |||| ||| ||||| ||||||||||| ||||
Sbjct 8769 ATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAGACCAACTTCTTCGAGAAGC 8710
Query 269309 GTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
| || ||||||| ||| ||||||| |||
Sbjct 8709 GAGTTGGCGACTACCAAAAAGCTGGTGTTATG 8678
>seq5771
Length=11851
Score = 100 bits (110), Expect = 7e-16
Identities = 137/190 (72%), Gaps = 6/190 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| ||||| || | | |||||||| || || | ||| ||||| |||||||||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
| ||| |||||| || ||| ||||| || || || || || || | || || ||
Sbjct 7579 AAACGTTGTTGA---TCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTG 7635
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| ||||| || || || ||||| ||||| || |||| |||||||||
Sbjct 7636 TCGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACG 7695
Query 288463 AATATCTGCA 288472
|| | ||||
Sbjct 7696 AAGCTATGCA 7705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179543385304910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |