Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5062 132 1e-25 seq894 132 1e-25 seq4745 111 4e-19 seq5771 100 7e-16 >seq5062 Length=19932 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || ||||| || ||||| | ||| || || |||||| Sbjct 11114 TCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAG 11173 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| |||||| | ||||||||| || ||||||||||| || | ||| || || Sbjct 11174 ATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTA 11233 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || || || || || ||||| || || || || || ||||||||| Sbjct 11234 TCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACG 11293 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11294 AAGATCTGCAT 11304 >seq894 Length=6424 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||| | || ||| || ||||| || ||||||| Sbjct 3667 CCACCACGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAA 3726 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || |||||||||| ||| |||||| | ||| Sbjct 3727 AGAGTGCGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGG 3786 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| || || || | || || || || |||| ||| ||||| || Sbjct 3787 ATACCCTCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACC 3846 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATAT 288467 || || ||||| ||||| ||||| ||||||||||||| ||| Sbjct 3847 TCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTGACGACTAT 3887 Score = 118 bits (130), Expect = 3e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | ||| || | ||| | || || ||||| || || ||||| | Sbjct 3438 TCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGA 3497 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || || || || || || || |||||||| ||||| |||||| | ||| Sbjct 3498 CAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGG 3557 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 || ||||| || || || || || ||| || ||||| || |||| ||| || || | Sbjct 3558 AATGCCTTCCTTGTCTTGAATCTT-GCTCTTTACGTTGTCGATAGTATCAGATGACTCAA 3616 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || | ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 3617 CCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || || ||||| || |||||| | || || || || Sbjct 3966 AGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCC 4025 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | ||| || || || ||||||| ||||||||| | || || || || |||||| Sbjct 4026 TCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATCC 4085 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || | || ||||| || |||| ||| ||||| || || || ||||| ||| Sbjct 4086 TGGATCTTAGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTC 4145 Query 288442 TTCCCGGT 288449 || ||||| Sbjct 4146 TTGCCGGT 4153 >seq4745 Length=15183 Score = 111 bits (122), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 269131 GACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAA 269190 || ||| | |||||| || | | || ||||| | ||| | ||||| ||||| || || Sbjct 8887 GAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTGATGAAGCAATACATTGAG 8828 Query 269191 TTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGAAAGTGTACAATTCGAAGA 269248 ||||| || || ||| |||| | || || ||| ||||||| || ||| || | Sbjct 8827 TTCGTCGCAGACCGT--CTTCTTGTTGCTCTTGGTAATGAGAAGGTTTACCGATCAGCCA 8770 Query 269249 ATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGC 269308 |||| |||| ||| |||||| ||||| |||| ||| ||||| ||||||||||| |||| Sbjct 8769 ATCCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAGACCAACTTCTTCGAGAAGC 8710 Query 269309 GTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 | || ||||||| ||| ||||||| ||| Sbjct 8709 GAGTTGGCGACTACCAAAAAGCTGGTGTTATG 8678 >seq5771 Length=11851 Score = 100 bits (110), Expect = 7e-16 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| ||||| || | | |||||||| || || | ||| ||||| ||||||||| Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | ||| |||||| || ||| ||||| || || || || || || | || || || Sbjct 7579 AAACGTTGTTGA---TCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTG 7635 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || || || ||||| ||||| || |||| ||||||||| Sbjct 7636 TCGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACG 7695 Query 288463 AATATCTGCA 288472 || | |||| Sbjct 7696 AAGCTATGCA 7705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179543385304910