Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq4745 91.5 3e-13 >seq4745 Length=15183 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 243544 GACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAA 243603 || ||| ||||||| || ||||||||||||| || | ||| || ||||| || Sbjct 8887 GAAGCTCTTCCATGTGCTCTCCTTGGCATGAACTCGGATTTGATGAAGCAATACATTGAG 8828 Query 243604 TTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAAC 243663 ||||| || ||||| || | | || |||||| ||||||| || ||| || || Sbjct 8827 TTCGTCGCAGACCGTCTTCTTGTTGCTCTTGGTAATGAGAAGGTTTACCGATCAGCCAAT 8768 Query 243664 CCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGT 243723 || || | ||| ||||| |||||| || ||| || || ||||||||||| ||||| Sbjct 8767 CCATTCGACTTCATGGAAAACATTTCTCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGA 8708 Query 243724 GTCAGTGATTATCAACGCCCTGGTGTGATG 243753 || | || || ||| ||||||| ||| Sbjct 8707 GTTGGCGACTACCAAAAAGCTGGTGTTATG 8678 Score = 84.2 bits (92), Expect = 5e-11 Identities = 191/281 (68%), Gaps = 6/281 (2%) Strand=Plus/Minus Query 242896 ATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTG 242955 || ||| | ||||| |||||||| | |||| |||| |||||| | |||||| | | || Sbjct 9591 ATCTGGCAGATGTACAAGAAGGCCGAGGCATCCTTCTGGACCGCAGAGGAAATCGATTTG 9532 Query 242956 --AACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATCA 243013 || | | | || ||||||| | | | |||||||||||| || ||| | |||||| Sbjct 9531 TCAAAGGAT-CTTCA-CGACTGGAACAACAGACTCAATGACGATGAGCGTTACTTCATCT 9474 Query 243014 AACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATC-TGCAGACC 243072 ||| |||| | || ||||| | |||||||| ||||| | ||||| | || || | Sbjct 9473 CTCACGTTCTCGCATTCTTCGCCGCATCCGATGGAATTGTCAATGAAAACCTTGTCGAAC 9414 Query 243073 AACTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTC 243132 ||| |||| || ||| |||| || ||||| || || | || ||||| | Sbjct 9413 -GCTTCAGTGGAGAGGTACAAATTCCGGAAGCACGATGCTTCTACGGTTTCCAAATCATG 9355 Query 243133 AACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGA 243173 | ||| ||||| || ||| ||| | ||||| ||||| Sbjct 9354 ATGGAAAACATCCACTCGGAAACATACTCGCTTCTCATCGA 9314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102776210375750