Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4887 201 1e-46 seq4745 91.5 2e-13 >seq4887 Length=16554 Score = 201 bits (222), Expect = 1e-46 Identities = 933/1459 (64%), Gaps = 55/1459 (4%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| || ||||| || | |||||| || | Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | ||| || | |||| || |||||| ||| |||||||||||||| Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 113774 ||||| || || ||||| | || || || ||| | || ||||||| ||||| Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACAGTCT 11793 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 ||||||| ||| | ||| ||||||| | || ||||| || || ||||| | Sbjct 11792 TGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAG 11733 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 || ||| | | |||||| | | ||||| || || || | | ||||| | | Sbjct 11732 CGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAA 11673 Query 113895 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 113952 | ||| | ||||||| ||||| || || || || | |||||| |||| Sbjct 11672 GCCATGGGT--TGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGA 11615 Query 113953 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCAT 114012 ||||||||||| || || || ||| ||| | ||||| | || ||| || ||||| Sbjct 11614 AGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCAT 11555 Query 114013 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTC 114072 || || | || | ||||| || | ||| | || | | || || ||||||| || Sbjct 11554 AGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATC 11495 Query 114073 CCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128 ||| || || || || | || | ||| ||||||||| | || || ||| | Sbjct 11494 CCAATCCCAGA-GATCTGTAGGAGTAACACCC---CACATATCATATTGAAGTTCACCCT 11439 Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC--GCCAATTCGGA 114186 ||| |||| || || || | ||||| ||||||||| | |||| | |||| | || Sbjct 11438 TGGAAACTGGAGAACCTTCGTAGGTCTCATATGGGCCC---AACTCCTTGGCAAT-CTGA 11383 Query 114187 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 114244 | | | | ||| |||| || || ||||| ||||| | || | ||| Sbjct 11382 ACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTG 11323 Query 114245 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304 ||||| ||||| || | | ||| | || |||| || ||||| || ||| Sbjct 11322 GCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACA 11263 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAA 114363 || | |||| || || || | | ||| ||||| ||| ||| || ||||| | Sbjct 11262 CCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGCT-TCTGGGACAGGATAGTA 11204 Query 114364 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 114423 || | || |||| | | || | ||| || ||||| | || ||||||||||| Sbjct 11203 GTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTT 11144 Query 114424 TTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 114480 || | ||||| || | | ||| | |||||| | | || || || || || || Sbjct 11143 TTGGAAATCATAAGTTCC---CTCAGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGC 11087 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 || ||||| || ||||||| ||| ||| || | ||||| || ||||| || Sbjct 11086 CAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTT 11027 Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600 || || || ||||| | ||||||||| || |||| |||| || ||||| ||||| Sbjct 11026 GGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTA 10967 Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGG 114659 ||||||| | || | || ||||| || |||| || || || | | ||| | | | | Sbjct 10966 AAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTG 10907 Query 114660 CGGCTGGCACAGTGGCGTT--GGCTCGCCCCTCCTC-CTCGTACTTTGTGTAGAGGGCTT 114716 | || | ||| || | | ||| || |||||| | ||||| || | Sbjct 10906 AGCCTTGA----TGGTCTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCT 10851 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG---TGCCTTATCTGGGCAGAAGAGAG 114773 | || || ||||| | | || | | ||||| | | ||| ||||| | ||| | Sbjct 10850 CGAATTCATCACCATAGACATCAGCCAAGCCTGGACATTCGTTA---GGGCACATGAGTG 10794 Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 ||| | || || |||||||||||||||||||| ||||| |||||||| || ||| Sbjct 10793 TCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGA 10734 Query 114834 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893 ||||||| || | | |||| || | || || || || | ||||| || || | Sbjct 10733 AGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAA 10674 Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------AC 114947 || |||||| ||||| ||||| ||||| || || | || || | | || || Sbjct 10673 AGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTTGTTAC 10617 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 || | |||| ||||| || || ||| || || || |||||||| |||| |||||| | Sbjct 10616 CACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGT 10557 Query 115008 CAGATTGGCCATTTGTCCC 115026 ||| | || ||||| || Sbjct 10556 TAGAGTTACCGTTTGTGCC 10538 >seq4745 Length=15183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || ||||||||||||||||||||||| || || || ||| || || | ||| | || Sbjct 8997 TGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATCAAGCCA 9056 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | ||||||||| | || ||||| ||||||||| || || || Sbjct 9057 CGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCAACGGCA 9116 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGG 126206 ||||| || | |||||| | |||||||| Sbjct 9117 GCGAATGCGACGAGACGTTGAGCAAAGG 9144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597298755472600