Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 201 1e-46
seq4745 91.5 2e-13
>seq4887
Length=16554
Score = 201 bits (222), Expect = 1e-46
Identities = 933/1459 (64%), Gaps = 55/1459 (4%)
Strand=Plus/Minus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
||||| |||||||| || |||||||| || ||||| || | |||||| || |
Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911
Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716
| |||| | ||| || | |||| || |||||| ||| ||||||||||||||
Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851
Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 113774
||||| || || ||||| | || || || ||| | || ||||||| |||||
Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACAGTCT 11793
Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834
||||||| ||| | ||| ||||||| | || ||||| || || ||||| |
Sbjct 11792 TGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAG 11733
Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894
|| ||| | | |||||| | | ||||| || || || | | ||||| | |
Sbjct 11732 CGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAA 11673
Query 113895 G--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 113952
| ||| | ||||||| ||||| || || || || | |||||| ||||
Sbjct 11672 GCCATGGGT--TGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGA 11615
Query 113953 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCAT 114012
||||||||||| || || || ||| ||| | ||||| | || ||| || |||||
Sbjct 11614 AGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCAT 11555
Query 114013 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTC 114072
|| || | || | ||||| || | ||| | || | | || || ||||||| ||
Sbjct 11554 AGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATC 11495
Query 114073 CCAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 114128
||| || || || || | || | ||| ||||||||| | || || ||| |
Sbjct 11494 CCAATCCCAGA-GATCTGTAGGAGTAACACCC---CACATATCATATTGAAGTTCACCCT 11439
Query 114129 GGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC--GCCAATTCGGA 114186
||| |||| || || || | ||||| ||||||||| | |||| | |||| | ||
Sbjct 11438 TGGAAACTGGAGAACCTTCGTAGGTCTCATATGGGCCC---AACTCCTTGGCAAT-CTGA 11383
Query 114187 GCTCGCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTG 114244
| | | | ||| |||| || || ||||| ||||| | || | |||
Sbjct 11382 ACAGACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTG 11323
Query 114245 GCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304
||||| ||||| || | | ||| | || |||| || ||||| || |||
Sbjct 11322 GCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACA 11263
Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAA 114363
|| | |||| || || || | | ||| ||||| ||| ||| || ||||| |
Sbjct 11262 CCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGCT-TCTGGGACAGGATAGTA 11204
Query 114364 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 114423
|| | || |||| | | || | ||| || ||||| | || |||||||||||
Sbjct 11203 GTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTT 11144
Query 114424 TTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGC 114480
|| | ||||| || | | ||| | |||||| | | || || || || || ||
Sbjct 11143 TTGGAAATCATAAGTTCC---CTCAGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGC 11087
Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540
|| ||||| || ||||||| ||| ||| || | ||||| || ||||| ||
Sbjct 11086 CAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTT 11027
Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600
|| || || ||||| | ||||||||| || |||| |||| || ||||| |||||
Sbjct 11026 GGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTA 10967
Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGG 114659
||||||| | || | || ||||| || |||| || || || | | ||| | | | |
Sbjct 10966 AAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTG 10907
Query 114660 CGGCTGGCACAGTGGCGTT--GGCTCGCCCCTCCTC-CTCGTACTTTGTGTAGAGGGCTT 114716
| || | ||| || | | ||| || |||||| | ||||| || |
Sbjct 10906 AGCCTTGA----TGGTCTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCT 10851
Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG---TGCCTTATCTGGGCAGAAGAGAG 114773
| || || ||||| | | || | | ||||| | | ||| ||||| | ||| |
Sbjct 10850 CGAATTCATCACCATAGACATCAGCCAAGCCTGGACATTCGTTA---GGGCACATGAGTG 10794
Query 114774 ACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833
||| | || || |||||||||||||||||||| ||||| |||||||| || |||
Sbjct 10793 TCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGA 10734
Query 114834 AGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893
||||||| || | | |||| || | || || || || | ||||| || || |
Sbjct 10733 AGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAA 10674
Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------AC 114947
|| |||||| ||||| ||||| ||||| || || | || || | | || ||
Sbjct 10673 AGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTTGTTAC 10617
Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007
|| | |||| ||||| || || ||| || || || |||||||| |||| |||||| |
Sbjct 10616 CACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGT 10557
Query 115008 CAGATTGGCCATTTGTCCC 115026
||| | || ||||| ||
Sbjct 10556 TAGAGTTACCGTTTGTGCC 10538
>seq4745
Length=15183
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118
|| ||||||||||||||||||||||| || || || ||| || || | ||| | ||
Sbjct 8997 TGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATCAAGCCA 9056
Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178
|||||||| | ||||||||| | || ||||| ||||||||| || || ||
Sbjct 9057 CGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCAACGGCA 9116
Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGG 126206
||||| || | |||||| | ||||||||
Sbjct 9117 GCGAATGCGACGAGACGTTGAGCAAAGG 9144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597298755472600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |