Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq894 131 2e-25 seq5062 105 7e-18 >seq894 Length=6424 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| ||||| ||||||||||||||||| |||||||| | ||||| | | Sbjct 3222 ACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACC 3281 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | ||||| |||||||| || | ||| || ||||||| ||| | || |||||| Sbjct 3282 ATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTT 3341 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| ||| |||| | | | || || ||||||||| || | ||| || Sbjct 3342 GTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAAT 3401 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || | ||||| ||||||||||||||| Sbjct 3402 TGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| || || |||||||||||| ||||| || | ||| || || | || || Sbjct 3457 ACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCC 3516 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 | ||||||||||||||| ||||| || || || || | ||| | || |||||||| Sbjct 3517 AACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTC 3572 >seq5062 Length=19932 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | |||||||| ||||| || | || |||||| || || |||||||| | Sbjct 11077 ACCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 11136 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || || ||||| || ||||| || || || || || || | ||| Sbjct 11137 AAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGG 11196 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||| ||| ||| || ||||| | | | |||||| || || || Sbjct 11197 GATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGAC 11256 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 11257 CTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543162926274800