Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq894 96.9 3e-15
seq4887 84.2 2e-11
>seq894
Length=6424
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || | ||| | ||||| || |||||||||||||| || | | ||| || | ||
Sbjct 3453 AAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATC 3512
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| | |||||| || || | ||||| || || || || || ||||| ||||| || ||
Sbjct 3513 CTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTC 3572
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| || || |||||| || | |||||| | || || || | ||| | ||
Sbjct 3573 TTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGT 3632
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| ||||| | ||| || |||||||| |||||
Sbjct 3633 CTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
>seq4887
Length=16554
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 155222 CAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA-CACGAAG 155280
|||||| || || || || | || || || || |||| |||| ||| || || || |
Sbjct 10453 CAAAGTATCATAGATACCATCAATACTATCCTCCTTCATA-TCAATAAGGAAGCATGATG 10395
Query 155281 ATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTT 155340
| | |||| || || || || | || | ||| ||| |||||||||||| ||
Sbjct 10394 AAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATT 10335
Query 155341 TGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGA 155400
|||||| | |||||||| ||||||||||| ||||| ||| |||||| ||||| |
Sbjct 10334 TGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAA 10275
Query 155401 TCGCCACGCGCATCAGCATGTGTTG 155425
|| || ||||| | ||| |||||
Sbjct 10274 CGGCAACACGCATGATCATTTGTTG 10250
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499598926361800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |