Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq894 96.9 3e-15 seq4887 84.2 2e-11 >seq894 Length=6424 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | ||||| || |||||||||||||| || | | ||| || | || Sbjct 3453 AAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATC 3512 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | |||||| || || | ||||| || || || || || ||||| ||||| || || Sbjct 3513 CTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTC 3572 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || |||||| || | |||||| | || || || | ||| | || Sbjct 3573 TTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGT 3632 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | ||| || |||||||| ||||| Sbjct 3633 CTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 >seq4887 Length=16554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 155222 CAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA-CACGAAG 155280 |||||| || || || || | || || || || |||| |||| ||| || || || | Sbjct 10453 CAAAGTATCATAGATACCATCAATACTATCCTCCTTCATA-TCAATAAGGAAGCATGATG 10395 Query 155281 ATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTT 155340 | | |||| || || || || | || | ||| ||| |||||||||||| || Sbjct 10394 AAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATT 10335 Query 155341 TGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGA 155400 |||||| | |||||||| ||||||||||| ||||| ||| |||||| ||||| | Sbjct 10334 TGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAA 10275 Query 155401 TCGCCACGCGCATCAGCATGTGTTG 155425 || || ||||| | ||| ||||| Sbjct 10274 CGGCAACACGCATGATCATTTGTTG 10250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499598926361800