Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4887 154 1e-32 >seq4887 Length=16554 Score = 154 bits (170), Expect = 1e-32 Identities = 413/629 (66%), Gaps = 2/629 (0%) Strand=Plus/Plus Query 94003 TGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCC 94062 ||||| | || ||||| |||| || || || || ||| ||||| | ||||| Sbjct 10460 TGTGCTATGATTTCAAAGAACGCTGGTGGTATTGGTCTCAACATCCACAGAATCCGTGCT 10519 Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122 | ||| ||||||| || || || || | ||| ||||| |||| |||||||| || Sbjct 10520 ACTGGTGCCTACATTGCAGGCACAAACGGTAACTCTAACGGTATCGTTCCTATGCTTCGA 10579 Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182 || ||||||||| | || | || || ||||| |||||| | | | ||| | || Sbjct 10580 GTTTTCAACAACACCGCTAGATATGTCGACCAAGGTGGTAACAAGCGCCCTGGTGCATTT 10639 Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAAC 94242 || || || || || || ||||| ||||| || | ||| | ||||| ||||||||| Sbjct 10640 GCCGTTTACCTTGAACCATGGCATGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAAC 10699 Query 94243 CACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTT 94302 |||||||| || | || || | || |||||||| || |||||| | ||||| || Sbjct 10700 CACGGCAAAGAGGAAGTTAGAGCACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTC 10759 Query 94303 TTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCC 94362 || ||||| || || || || ||| | ||||| || | || || || |||||||| Sbjct 10760 TTCATGAAGCGTGTTGAAAAGAACGGAGACTGGACACTCATGTGCCCTAACGAATGTCCA 10819 Query 94363 GGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACT-TGTATGCTCGTTACGAATCGCA 94421 || || | || || | ||| | | || || || | |||| ||||||| || Sbjct 10820 GGCTTGGCTGATGTCTATGG-TGATGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACA 10878 Query 94422 GGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACA 94481 || || | | ||| || | ||| ||||| ||| || ||| | || | || Sbjct 10879 AGGTAAAGGTCGTAAGACCATCAAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCA 10938 Query 94482 GGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCA 94541 | ||||| || | || | ||| | | ||| || || |||| ||| ||||| Sbjct 10939 GACTGAGACTGGAAACCCTTTCATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCA 10998 Query 94542 GCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTC 94601 || ||||||| ||| ||||| || ||||||| || || ||||| || || | Sbjct 10999 AAAGAACCTCGGCACAATCCGTAGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGC 11058 Query 94602 TCCGGACGAGATTGCTGTGTGTAACCTGG 94630 ||||| ||| ||||| |||||| ||| Sbjct 11059 ACCGGATGAGGTTGCTTGCTGTAACTTGG 11087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494677778226200