Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq894 98.7 1e-15
seq4887 91.5 1e-13
>seq894
Length=6424
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | |||||||| || |||||||||||||||
Sbjct 3951 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4010
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||||||||| || || | | |||| | |||||||||||| |||||
Sbjct 4011 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGA 4070
Query 138508 ATACCTTCTTTGTC 138521
||||| || || ||
Sbjct 4071 ATACCCTCCTTATC 4084
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464
||| ||||||| | ||||||||||||||||||||||| || ||||| |||||
Sbjct 3456 AACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTC 3515
Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524
| || ||||| | |||| ||||| ||||| || || || || ||||| ||||| |
Sbjct 3516 CAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTC-TT 3574
Query 138525 GATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583
|| | || | |||| | || | || || | ||||| ||||| | || | || |
Sbjct 3575 GAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCT 3634
Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| || || ||||| || || |||||||||||
Sbjct 3635 TTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
>seq4887
Length=16554
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373
|| ||||| || ||||| || ||| ||||| ||||| ||| | | ||||| | |
Sbjct 10377 GTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAAGTTG 10318
Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433
|| ||||||||||| ||| |||||||| |||||||| || | || || ||||||| |
Sbjct 10317 TATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCATGATC 10258
Query 154434 ATGTGCTGCGGACGTTCGGCGAC 154456
|| || || |||||||| || ||
Sbjct 10257 ATTTGTTGTGGACGTTCAGCAAC 10235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496216836908400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |