Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq894 98.7 1e-15 seq4887 91.5 1e-13 >seq894 Length=6424 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | |||||||| || ||||||||||||||| Sbjct 3951 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 4010 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || || | | |||| | |||||||||||| ||||| Sbjct 4011 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGA 4070 Query 138508 ATACCTTCTTTGTC 138521 ||||| || || || Sbjct 4071 ATACCCTCCTTATC 4084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| ||||||| | ||||||||||||||||||||||| || ||||| ||||| Sbjct 3456 AACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTC 3515 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | || ||||| | |||| ||||| ||||| || || || || ||||| ||||| | Sbjct 3516 CAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTC-TT 3574 Query 138525 GATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | || | |||| | || | || || | ||||| ||||| | || | || | Sbjct 3575 GAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCT 3634 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || ||||| || || ||||||||||| Sbjct 3635 TTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665 >seq4887 Length=16554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 || ||||| || ||||| || ||| ||||| ||||| ||| | | ||||| | | Sbjct 10377 GTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAAGTTG 10318 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 || ||||||||||| ||| |||||||| |||||||| || | || || ||||||| | Sbjct 10317 TATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCATGATC 10258 Query 154434 ATGTGCTGCGGACGTTCGGCGAC 154456 || || || |||||||| || || Sbjct 10257 ATTTGTTGTGGACGTTCAGCAAC 10235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496216836908400