Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq894 102 6e-17
seq5062 98.7 7e-16
>seq894
Length=6424
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045
|| ||||| ||||||||||| ||| |||| | || || ||||| || |||||| |
Sbjct 3247 TCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAA 3306
Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105
||||| || ||||||||| ||| || || |||||||| || || | || || |
Sbjct 3307 ATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTA 3366
Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165
|| || ||||| ||| || ||||| ||||| || || || |||| ||| || |||
Sbjct 3367 TCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3426
Query 15166 AAAATTTGCAT 15176
|| ||||||||
Sbjct 3427 AAGATTTGCAT 3437
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| ||||| | || || || ||||| |||||||| || || | | | || ||
Sbjct 3456 AACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTC 3515
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|| || || |||||| | || | ||| ||||| || |||||| |||||||||||
Sbjct 3516 CAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTG 3575
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| ||||| ||||| | || |||||||| || || || || || || || ||
Sbjct 3576 AATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTT 3635
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||| || || ||||| ||||||
Sbjct 3636 TCCGGTAAGAGTCTTGACGAAAATCTGCATA 3666
>seq5062
Length=19932
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||| || || || || || |||||||||||| ||| | | | |||||
Sbjct 11096 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 11155
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| ||| ||||| ||| | || | ||| ||||| || ||| ||||| ||||| ||
Sbjct 11156 AGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGG 11215
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| |||| ||| | || ||||| ||| || || |||| ||| |||||||||
Sbjct 11216 ATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTA 11275
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || || || || |||||
Sbjct 11276 CCCGTGAGGGTCTTGACGAAGATCTGCAT 11304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357360007273325
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |