Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq894 102 6e-17 seq5062 98.7 7e-16 >seq894 Length=6424 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || ||||| ||||||||||| ||| |||| | || || ||||| || |||||| | Sbjct 3247 TCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAA 3306 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| || ||||||||| ||| || || |||||||| || || | || || | Sbjct 3307 ATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTA 3366 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || || ||||| ||| || ||||| ||||| || || || |||| ||| || ||| Sbjct 3367 TCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3426 Query 15166 AAAATTTGCAT 15176 || |||||||| Sbjct 3427 AAGATTTGCAT 3437 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| | || || || ||||| |||||||| || || | | | || || Sbjct 3456 AACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTC 3515 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || |||||| | || | ||| ||||| || |||||| ||||||||||| Sbjct 3516 CAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTG 3575 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||||| ||||| | || |||||||| || || || || || || || || Sbjct 3576 AATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTT 3635 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || ||||| |||||| Sbjct 3636 TCCGGTAAGAGTCTTGACGAAAATCTGCATA 3666 >seq5062 Length=19932 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || |||||||||||| ||| | | | ||||| Sbjct 11096 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCG 11155 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| ||| | || | ||| ||||| || ||| ||||| ||||| || Sbjct 11156 AGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGG 11215 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| |||| ||| | || ||||| ||| || || |||| ||| ||||||||| Sbjct 11216 ATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTA 11275 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || || ||||| Sbjct 11276 CCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357360007273325