Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq4745 104 2e-17
seq894 91.5 1e-13
>seq4745
Length=15183
Score = 104 bits (114), Expect = 2e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471
|| |||||| |||| |||||| | ||||| || || ||||| ||||| || || |||
Sbjct 8863 GGCATGAACTCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTT 8804
Query 47472 CAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATT 47531
|| || ||| |||||| | | ||||||||||| || ||| | ||||||
Sbjct 8803 GCTCTTGGTAATGAGAAGGTTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATT 8744
Query 47532 TCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|| |||| |||||||||||||| ||||||||||| || ||||| ||
Sbjct 8743 TCTCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697
>seq894
Length=6424
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | |||||||||| || ||||| |||||||| ||||| ||
Sbjct 3438 TCCACCACGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGA 3497
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || || ||| || | ||| || |||||| |||| | || || ||||| || ||
Sbjct 3498 CAGGGTACGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGG 3557
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||| |||||||| || || ||| | ||||| ||| || || | ||| |
Sbjct 3558 AATGCCTTCCTTGTCTTGAATCTTGCTCTTTACGTTGT-CGATAGTATCAGATGACTCAA 3616
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | || | || || ||||| ||||| || || |||||||||||
Sbjct 3617 CCTCCAAAGTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475457143082800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |