Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4887 203 4e-47 seq4745 89.7 6e-13 >seq4887 Length=16554 Score = 203 bits (224), Expect = 4e-47 Identities = 1110/1746 (64%), Gaps = 47/1746 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || |||||||| || ||||| || | |||||| || | Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | ||| || | |||| || |||||| ||| |||||||||||||| Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 115735 || || || || ||||| | || || || ||| | || ||||||| ||||| Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACAGTCT 11793 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 ||||||| ||| | ||| ||||||| | || ||||| ||||| ||||| | Sbjct 11792 TGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAG 11733 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855 || ||| | | |||||| | | ||||| || || || | | ||||| | | Sbjct 11732 CGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAA 11673 Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCG 115915 | |||||||| ||||| || || || || | ||||||||||| | Sbjct 11672 GCCATGGGTTGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAG 11613 Query 115916 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 115975 |||||||||| || || || ||| ||| | ||||| | ||| ||| || ||||| | Sbjct 11612 TGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAG 11553 Query 115976 GTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCC 116035 | || | || | |||||||| | ||| | | || || ||||||| |||| Sbjct 11552 GAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCC 11493 Query 116036 AGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093 | || || || || | | | | | ||||||||||| | || || ||| | ||| Sbjct 11492 AATCCCAGA-GATCTGTAGGAGTAACAC-CCCACATATCATATTGAAGTTCACCCTTGGA 11435 Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAATTCGGAGCTC 116151 |||| || || || | ||||||||||||||| | |||| | |||| | || | Sbjct 11434 AACTGGAGAACCTTCGTAGGTCTCATATGGGCCC---AACTCCTTGGCAAT-CTGAACAG 11379 Query 116152 GCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209 | | | ||| |||| || || ||||| ||||| | || | ||||||| Sbjct 11378 ACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCT 11319 Query 116210 CGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 116269 | ||||| || | | |||| | || |||| || ||||| || ||||| | Sbjct 11318 CAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACACCAA 11259 Query 116270 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTC 116328 |||| || || || | | ||| ||||| ||| ||| || ||||| | || Sbjct 11258 CAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGCT-TCTGGGACAGGATAGTAGTTG 11200 Query 116329 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 116388 | || |||| | | || | ||| || ||||| | || ||||||||||||| | Sbjct 11199 ATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGG 11140 Query 116389 TAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445 ||||| || | | ||| | |||||| | | || || || || || |||| Sbjct 11139 AAATCATAAGTTCC---CTCAGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAG 11083 Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505 ||||| || ||||||| ||| ||| || | ||||| || ||||| || || Sbjct 11082 TTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAG 11023 Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGC 116565 || || ||||| | ||||||||| || |||| |||| || ||||| ||||| ||| Sbjct 11022 CTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGC 10963 Query 116566 ATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGC 116624 || | || | || ||||| || |||| || || || | | ||| | | | | | | Sbjct 10962 ATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCC 10903 Query 116625 TGGCACAGTGGCGTT--GGCTCGCCCCTCCTC-CTCGTACTTTGTGTAGAGGGCCTCAAA 116681 | | ||| || | | ||| || |||||| | ||||| ||||| || Sbjct 10902 TTGA----TGGTCTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAA 10847 Query 116682 CTCTTCACCCACAGCC-TCTGAGAGCCCTGG---TGCCTTATCTGGACAGAAGAGAGACC 116737 || ||||| | || | || | | ||||| | | ||| || || | ||| | || Sbjct 10846 TTCATCACC-ATAGACATCAGCCAAGCCTGGACATTCGTTA---GGGCACATGAGTGTCC 10791 Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797 | | || || ||||| |||||||||||||| ||||| |||||||| || |||||| Sbjct 10790 AGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGA 10731 Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857 |||| || | | |||| || | || || || || | ||||| || || | || Sbjct 10730 GATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGA 10671 Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCT 116914 |||||| ||||| ||||| ||||| || || | || || ||| |||| | | Sbjct 10670 CATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTT 10611 Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974 ||| ||||| || || || ||| || || |||||||| |||| |||||| | ||| | Sbjct 10610 GGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGT 10551 Query 116975 GGCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033 || ||||| || ||| | || | | || | || |||||||| | |||| Sbjct 10550 TACCGTTTGTGCCTGCAATGTAGGCACCAG-TAGCACGGATTCTGTGGATGTTGAGACCA 10492 Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093 ||||| || || |||||| || || || | | | | | | ||||| ||||| Sbjct 10491 ATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAGATACCATCA 10432 Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 117153 || || |||| | | || |||||||| || | || | | ||| ||||| Sbjct 10431 ATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCC 10372 Query 117154 GCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGT 117212 || |||||| ||||| | ||||| | || || | | ||||||| | ||| || Sbjct 10371 GCAGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATCAAGTTGTATGT 10313 Query 117213 CTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTA 117272 || | | || ||| || || ||||||||||| | | || ||||| | ||| | Sbjct 10312 TTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTG 10253 Query 117273 TTGGGG 117278 ||| || Sbjct 10252 TTGTGG 10247 >seq4745 Length=15183 Score = 89.7 bits (98), Expect = 6e-13 Identities = 297/454 (65%), Gaps = 10/454 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| || |||| || || ||||| Sbjct 8696 GTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGCGAGAGAAATGTTTTCCAT 8755 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 || || ||||| || ||| ||| || || |||| || |||| Sbjct 8756 GAAGTCGAATGGATTGGCTGATCGGTAAACC-TTCTCATTACCAAGAGCAACAAGAAGAC 8814 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||||||||| | |||| || |||||||| || | ||| || Sbjct 8815 GGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTTCATGCCAAGGAGAGCAC 8874 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 |||| || || ||| | ||| | | |||||| | ||||| || | | | | Sbjct 8875 ATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGCCTCTGTAATAACATCCT 8934 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCA--CAG-CAAAC 127525 ||| | | | || | || || | |||| | |||||| || ||| | || Sbjct 8935 GAACGGCTTGTTTGCTTGGGCGAT-GCTTCAAGTGCGAGAAGAG---CAGGCAGGCGAAG 8990 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || || ||||||||||||||||||||||| || || || ||| ||||| | ||| Sbjct 8991 TCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATC 9050 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 | || |||||||| | ||||||||| | || || ||| ||||||||| || || Sbjct 9051 AAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCA 9110 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || ||||| || | ||||| | ||||||| Sbjct 9111 ACGGCAGCGAATGCGACGAGACGTTGAGCAAAGG 9144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613450872370200