Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 203 4e-47
seq4745 89.7 6e-13
>seq4887
Length=16554
Score = 203 bits (224), Expect = 4e-47
Identities = 1110/1746 (64%), Gaps = 47/1746 (3%)
Strand=Plus/Minus
Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617
||||| |||||||| || |||||||| || ||||| || | |||||| || |
Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911
Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677
| |||| | ||| || | |||| || |||||| ||| ||||||||||||||
Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851
Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTTC 115735
|| || || || ||||| | || || || ||| | || ||||||| |||||
Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAA-CA-ATGTTTCGTTGAGAGATTTCCCAAACAGTCT 11793
Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795
||||||| ||| | ||| ||||||| | || ||||| ||||| ||||| |
Sbjct 11792 TGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCAG 11733
Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855
|| ||| | | |||||| | | ||||| || || || | | ||||| | |
Sbjct 11732 CGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGAA 11673
Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCG 115915
| |||||||| ||||| || || || || | ||||||||||| |
Sbjct 11672 GCCATGGGTTGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGGAAG 11613
Query 115916 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 115975
|||||||||| || || || ||| ||| | ||||| | ||| ||| || ||||| |
Sbjct 11612 TGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCATAG 11553
Query 115976 GTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCC 116035
| || | || | |||||||| | ||| | | || || ||||||| ||||
Sbjct 11552 GAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCTTGAGGCTATCCC 11493
Query 116036 AGTCGTAGTTGAGCTTT--GTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGA 116093
| || || || || | | | | | ||||||||||| | || || ||| | |||
Sbjct 11492 AATCCCAGA-GATCTGTAGGAGTAACAC-CCCACATATCATATTGAAGTTCACCCTTGGA 11435
Query 116094 CGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC--GCCAATTCGGAGCTC 116151
|||| || || || | ||||||||||||||| | |||| | |||| | || |
Sbjct 11434 AACTGGAGAACCTTCGTAGGTCTCATATGGGCCC---AACTCCTTGGCAAT-CTGAACAG 11379
Query 116152 GCCTCG--AGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCT 116209
| | | ||| |||| || || ||||| ||||| | || | |||||||
Sbjct 11378 ACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGATGTTTGGCCT 11319
Query 116210 CGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 116269
| ||||| || | | |||| | || |||| || ||||| || ||||| |
Sbjct 11318 CAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCCTGAACACCAA 11259
Query 116270 GGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATTC 116328
|||| || || || | | ||| ||||| ||| ||| || ||||| | ||
Sbjct 11258 CAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGCT-TCTGGGACAGGATAGTAGTTG 11200
Query 116329 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 116388
| || |||| | | || | ||| || ||||| | || ||||||||||||| |
Sbjct 11199 ATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCATGAAGCTTTTGG 11140
Query 116389 TAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTAGGAAGGGCGATTGACGCCAGA 116445
||||| || | | ||| | |||||| | | || || || || || ||||
Sbjct 11139 AAATCATAAGTTCC---CTCAGCCATGTTGACAAAGGTTGGGAGAGCAATAGAAGCCAAG 11083
Query 116446 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 116505
||||| || ||||||| ||| ||| || | ||||| || ||||| || ||
Sbjct 11082 TTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGCACAAGTTGGAG 11023
Query 116506 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGC 116565
|| || ||||| | ||||||||| || |||| |||| || ||||| ||||| |||
Sbjct 11022 CTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCATCTTTGTAAAGC 10963
Query 116566 ATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGC 116624
|| | || | || ||||| || |||| || || || | | ||| | | | | | |
Sbjct 10962 ATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAAGCTTTTGAGCC 10903
Query 116625 TGGCACAGTGGCGTT--GGCTCGCCCCTCCTC-CTCGTACTTTGTGTAGAGGGCCTCAAA 116681
| | ||| || | | ||| || |||||| | ||||| ||||| ||
Sbjct 10902 TTGA----TGGTCTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAGAGAGCCTCGAA 10847
Query 116682 CTCTTCACCCACAGCC-TCTGAGAGCCCTGG---TGCCTTATCTGGACAGAAGAGAGACC 116737
|| ||||| | || | || | | ||||| | | ||| || || | ||| | ||
Sbjct 10846 TTCATCACC-ATAGACATCAGCCAAGCCTGGACATTCGTTA---GGGCACATGAGTGTCC 10791
Query 116738 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 116797
| | || || ||||| |||||||||||||| ||||| |||||||| || ||||||
Sbjct 10790 AGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGA 10731
Query 116798 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 116857
|||| || | | |||| || | || || || || | ||||| || || | ||
Sbjct 10730 GATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGA 10671
Query 116858 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCT 116914
|||||| ||||| ||||| ||||| || || | || || ||| |||| | |
Sbjct 10670 CATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTT 10611
Query 116915 GGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATT 116974
||| ||||| || || || ||| || || |||||||| |||| |||||| | ||| |
Sbjct 10610 GGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGT 10551
Query 116975 GGCCATTTGTCCCCCGAAT-ACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033
|| ||||| || ||| | || | | || | || |||||||| | ||||
Sbjct 10550 TACCGTTTGTGCCTGCAATGTAGGCACCAG-TAGCACGGATTCTGTGGATGTTGAGACCA 10492
Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093
||||| || || |||||| || || || | | | | | | ||||| |||||
Sbjct 10491 ATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAGATACCATCA 10432
Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 117153
|| || |||| | | || |||||||| || | || | | ||| |||||
Sbjct 10431 ATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTGTGGAGTACCC 10372
Query 117154 GCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGT 117212
|| |||||| ||||| | ||||| | || || | | ||||||| | ||| ||
Sbjct 10371 GCAGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATCAAGTTGTATGT 10313
Query 117213 CTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTA 117272
|| | | || ||| || || ||||||||||| | | || ||||| | ||| |
Sbjct 10312 TTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCATGATCATTTG 10253
Query 117273 TTGGGG 117278
||| ||
Sbjct 10252 TTGTGG 10247
>seq4745
Length=15183
Score = 89.7 bits (98), Expect = 6e-13
Identities = 297/454 (65%), Gaps = 10/454 (2%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| || || ||||||||||||||||| ||||| || |||| || || |||||
Sbjct 8696 GTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGCGAGAGAAATGTTTTCCAT 8755
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349
|| || ||||| || ||| ||| || || |||| || ||||
Sbjct 8756 GAAGTCGAATGGATTGGCTGATCGGTAAACC-TTCTCATTACCAAGAGCAACAAGAAGAC 8814
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
| || | |||| |||||||||| | |||| || |||||||| || | ||| ||
Sbjct 8815 GGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTTCATGCCAAGGAGAGCAC 8874
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469
|||| || || ||| | ||| | | |||||| | ||||| || | | | |
Sbjct 8875 ATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGCCTCTGTAATAACATCCT 8934
Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCA--CAG-CAAAC 127525
||| | | | || | || || | |||| | |||||| || ||| | ||
Sbjct 8935 GAACGGCTTGTTTGCTTGGGCGAT-GCTTCAAGTGCGAGAAGAG---CAGGCAGGCGAAG 8990
Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585
|| || ||||||||||||||||||||||| || || || ||| ||||| | |||
Sbjct 8991 TCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATC 9050
Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645
| || |||||||| | ||||||||| | || || ||| ||||||||| || ||
Sbjct 9051 AAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCA 9110
Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
|| ||||| || | ||||| | |||||||
Sbjct 9111 ACGGCAGCGAATGCGACGAGACGTTGAGCAAAGG 9144
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613450872370200
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