Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq894 123 6e-23 seq5062 109 1e-18 seq5771 105 2e-17 >seq894 Length=6424 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || | ||||||||||||||| | ||||||||| | || || Sbjct 3445 CGAAGGCGAAGAACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTA 3504 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || |||||||||||||| || || || || ||| ||| Sbjct 3505 CGGCCATCCTCCAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCT 3564 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| |||| || || | || || || ||||| Sbjct 3565 TCCTTGTCTTGAATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAA 3624 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || ||||| || Sbjct 3625 GTGATTGTCTTTCCGGTAAGAGTCTTGACGAAAATCTG 3662 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||||| || | || | |||||| ||||| |||| ||||||||| | | ||| Sbjct 3673 CGAAGTCTCAGAACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTG 3732 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || ||||| || |||||||| | ||| || || || || || || Sbjct 3733 CGGCCGTCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCC 3792 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || |||| || || | | ||| || || | Sbjct 3793 TCCTTATCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGA 3852 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || |||||||| || || Sbjct 3853 GTGATAGTCTTGCCGGTGAGAGTCTTGAC 3881 >seq5062 Length=19932 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| |||||||||||||| |||| |||||| || | | ||| | ||||| Sbjct 11092 CAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATC 11151 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| || ||||| ||||||||||| ||||| || || || || ||||| || || Sbjct 11152 TTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATC 11211 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| || || |||| ||||| | | || || || | ||||| || Sbjct 11212 CTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGT 11271 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || || || Sbjct 11272 TTTACCCGTGAGGGTCTTGACGAAGATCTG 11301 >seq5771 Length=11851 Score = 105 bits (116), Expect = 2e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||| || |||| |||||| | |||||| || || |||||||| ||||||| Sbjct 7517 CCTTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGA 7576 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||| || || ||||| |||||| || || |||||||| ||| || | Sbjct 7577 TCAAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGT 7636 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| |||||| | | ||| || || | ||||| ||||||||||| Sbjct 7637 CGATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGT 7682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178810654267115