Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq894 129 7e-25 seq5062 116 4e-21 >seq894 Length=6424 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420 |||| ||| || | | ||| | ||||| ||||| || ||||||||||| || ||||| Sbjct 3205 TATTGGCCACCACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAA 3264 Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480 || || ||||| | | || || | ||||| || ||||| ||||| || || |||||| Sbjct 3265 TCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCG 3324 Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540 | || | || ||||||||| |||||| |||||| | | | || || |||| Sbjct 3325 GGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGAT 3384 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| || | ||| || || || || |||| || |||||||||||||||||| Sbjct 3385 TCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCATT 3438 >seq5062 Length=19932 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | |||||||| |||| || | || |||||| ||||| ||||| ||||| Sbjct 11078 CCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 11137 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || ||||| |||||||||||||| || | || || || || | || Sbjct 11138 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGG 11197 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| |||||| | |||| | | | |||||| || || || Sbjct 11198 ATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCGGAGGACTCGACC 11257 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| ||||| || || || || ||||| ||||| Sbjct 11258 TCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565186504049400