Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 127 2e-24
seq894 84.2 2e-11
>seq5062
Length=19932
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || |||||||| |||||||||||| | || |||||| || ||
Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | ||| || |||| || || |||||||| || | || |||
Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | ||| ||||| || || || || | ||||| || ||| ||||||
Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461
||||| ||||| |||| || || ||||| ||||||||
Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGTCCTGCGTTT 11087
>seq894
Length=6424
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || || || || ||||| | || || ||| | |
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | |||| |||||| || || | ||||| || || ||||| | || |
Sbjct 3605 GATACTATCGACAACG--TAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATC 3548
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| || ||||| | ||| || || ||| |||| || | || ||||| |||||||
Sbjct 3547 AACAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACA 3488
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||| |||||||| |||| | |||||||| || ||
Sbjct 3487 ACATTCAAAAGGAGTCGACTTTACATTTGGTTCTTCG 3451
Score = 82.4 bits (90), Expect = 8e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
|| || ||||| || ||| | || ||||| || | || | ||| ||||| || || ||
Sbjct 3800 GATAAGGAGGGTATCCCCCCTGATCAACAACGTTTGATCTTCGCTGGCAAGCAACTTGAG 3741
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| ||||| || ||||||||||||||| |||||| |||| | |||||||| |||
Sbjct 3740 GACGGCCGCACTCTTTCCGACTACAACATCCAGAAGGAATCGACTTTACATTTGGTTCTG 3681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500126877884800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |