Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq5020 136 2e-26
seq5771 125 3e-23
seq5062 111 6e-19
seq894 111 6e-19
seq5057 107 8e-18
>seq5020
Length=13931
Score = 136 bits (150), Expect = 2e-26
Identities = 195/275 (71%), Gaps = 11/275 (4%)
Strand=Plus/Plus
Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390
|||||||||||||| ||||| || | ||||| || || || |||||||| || || |||
Sbjct 1638 ACTGTTCCCGCTTACTTCAACGACTCCCAACGCCAGGCGACCAAAGATGCTGGTCAAATT 1697
Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450
|| ||||| || |||||| || | | || || || || |||||||| || ||||||||
Sbjct 1698 GCCGGTTTGAACGTTCTTAGAGTCGTCAACGAGCCAACCGCAGCTGCACTTGCATATGGC 1757
Query 451451 CTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509
|| | ||||| | || || || | || ||| | ||||| ||||||||
Sbjct 1758 CTTG----------AGAAAGATGAGGACAAGATCATCGCAGTCTACGATTTGGGTGGAGG 1807
Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569
||| ||||| ||||| || ||| | | || || || ||||| || | |||||
Sbjct 1808 TACTTTTGATATCTCTGTTCTCGAGATTCAGAAGGGTGTCTTCGAAGTCAAATCTACCAA 1867
Query 451570 TGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
|||||||| || | |||||||||||| | ||||
Sbjct 1868 CGGTGATACACACTTGGGAGGTGAAGATTTCGATA 1902
>seq5771
Length=11851
Score = 125 bits (138), Expect = 3e-23
Identities = 141/189 (75%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 391051 TGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTG 391110
|| ||| ||||| || || |||| ||||| || || || ||||| || ||||| || |
Sbjct 7705 TGCATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCG 7646
Query 391111 ATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAAC 391170
| | ||| || | | || || |||||||| ||||| |||||||| || |||||||
Sbjct 7645 ACACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAAC 7586
Query 391171 AACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATA 391230
||||||| || ||| | || || |||||||| |||||| | |||||| | |||||||| |
Sbjct 7585 AACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACA 7526
Query 391231 TTGATAAGG 391239
| | ||||
Sbjct 7525 TCCAAAAGG 7517
>seq5062
Length=19932
Score = 111 bits (122), Expect = 6e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || ||||| || || || || |||||||| || || || || || || || ||
Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || || | | ||| || || || |||||||| ||||| || |||||||||
Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| |||| ||| | || || ||||| |||||||| | ||| | | ||||| ||
Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || |||||||| ||
Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGT 11096
>seq894
Length=6424
Score = 111 bits (122), Expect = 6e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
|||| || || || || || || ||||| |||||||| |||||||| || |||| || |
Sbjct 3883 TCGTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACTATCG 3824
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| | |||| || |||||||||||||| || || || ||||||||||||||||| |
Sbjct 3823 ACAATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGTTTGA 3764
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239
| ||| | || || |||||||| || || | ||| | | || || || || | ||||
Sbjct 3763 TCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGG 3704
Query 391240 A 391240
|
Sbjct 3703 A 3703
Score = 104 bits (114), Expect = 9e-17
Identities = 141/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || || || || || || ||| | || ||||| ||||||
Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606
Query 391110 GATAACATTGAAGCTAT-TAAACAAAAA-ATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167
|||| || || | | |||| | || |||||||| |||||||| ||||| |||||||
Sbjct 3605 GATACTATCGA--CAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATC 3548
Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227
|||||||| | || ||| | || || || | || ||||| | || || |||| || |
Sbjct 3547 AACAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACA 3488
Query 391228 ATATTGATAAGGA 391240
| ||| | |||||
Sbjct 3487 ACATTCAAAAGGA 3475
>seq5057
Length=18684
Score = 107 bits (118), Expect = 8e-18
Identities = 107/136 (79%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867
|||||||| |||||||||| ||||||||| | |||| ||| || ||||| || || ||
Sbjct 14619 GTAAATACGACAGTTTTTGCAGGCATATTCAGGCCAATAGAGAATGTTTCTGTCGCAAAA 14560
Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926
| || || ||||| |||| ||||| |||||||||||| | ||||| ||||| || |
Sbjct 14559 AGTACCTTGATTAAATTTTCTTGAA-AAAGAATTTCAATTGTCTCTTTCAAAATTGGCAA 14501
Query 420927 TATACCAGAATGATGA 420942
| |||||||||||||
Sbjct 14500 AAGACCAGAATGATGA 14485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975532469463260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |