Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5020 136 2e-26 seq5771 125 3e-23 seq5062 111 6e-19 seq894 111 6e-19 seq5057 107 8e-18 >seq5020 Length=13931 Score = 136 bits (150), Expect = 2e-26 Identities = 195/275 (71%), Gaps = 11/275 (4%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 |||||||||||||| ||||| || | ||||| || || || |||||||| || || ||| Sbjct 1638 ACTGTTCCCGCTTACTTCAACGACTCCCAACGCCAGGCGACCAAAGATGCTGGTCAAATT 1697 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || ||||| || |||||| || | | || || || || |||||||| || |||||||| Sbjct 1698 GCCGGTTTGAACGTTCTTAGAGTCGTCAACGAGCCAACCGCAGCTGCACTTGCATATGGC 1757 Query 451451 CTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 || | ||||| | || || || | || ||| | ||||| |||||||| Sbjct 1758 CTTG----------AGAAAGATGAGGACAAGATCATCGCAGTCTACGATTTGGGTGGAGG 1807 Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569 ||| ||||| ||||| || ||| | | || || || ||||| || | ||||| Sbjct 1808 TACTTTTGATATCTCTGTTCTCGAGATTCAGAAGGGTGTCTTCGAAGTCAAATCTACCAA 1867 Query 451570 TGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 |||||||| || | |||||||||||| | |||| Sbjct 1868 CGGTGATACACACTTGGGAGGTGAAGATTTCGATA 1902 >seq5771 Length=11851 Score = 125 bits (138), Expect = 3e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 391051 TGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTG 391110 || ||| ||||| || || |||| ||||| || || || ||||| || ||||| || | Sbjct 7705 TGCATAGCTTCGTCAAGACCTTGACGGGTAAGACCATCACCCTTGAGGTCGAATCCTCCG 7646 Query 391111 ATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAAC 391170 | | ||| || | | || || |||||||| ||||| |||||||| || ||||||| Sbjct 7645 ACACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAGGGAATTCCCCCGGATCAAC 7586 Query 391171 AACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATA 391230 ||||||| || ||| | || || |||||||| |||||| | |||||| | |||||||| | Sbjct 7585 AACGTTTGATCTTCGCTGGAAAGCAACTTGAGGATGGACGCACTTTGTCTGATTATAACA 7526 Query 391231 TTGATAAGG 391239 | | |||| Sbjct 7525 TCCAAAAGG 7517 >seq5062 Length=19932 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || |||||||| || || || || || || || || Sbjct 11304 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAAACCATCACCCTAGAGGTCGAGTCCTCC 11245 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | ||| || || || |||||||| ||||| || ||||||||| Sbjct 11244 GACACTATCGATAATGTCAAAACCAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAA 11185 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| |||| ||| | || || ||||| |||||||| | ||| | | ||||| || Sbjct 11184 CAACGTCTAATCTTCGCCGGCAAGCAACTCGAAGATGGCCGCACTCTTTCCGATTACAAC 11125 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 11124 ATCCAGAAGGAGTCGACTCTTCACTTGGT 11096 >seq894 Length=6424 Score = 111 bits (122), Expect = 6e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || || || || ||||| |||||||| |||||||| || |||| || | Sbjct 3883 TCGTCAAGACTCTCACCGGCAAGACTATCACTCTTGAGGTTGAATCTTCGGATACTATCG 3824 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | |||| || |||||||||||||| || || || ||||||||||||||||| | Sbjct 3823 ACAATGTTAAGACCAAGATTCAAGATAAGGAGGGTATCCCCCCTGATCAACAACGTTTGA 3764 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || || |||||||| || || | ||| | | || || || || | |||| Sbjct 3763 TCTTCGCTGGCAAGCAACTTGAGGACGGCCGCACTCTTTCCGACTACAACATCCAGAAGG 3704 Query 391240 A 391240 | Sbjct 3703 A 3703 Score = 104 bits (114), Expect = 9e-17 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || || ||| | || ||||| |||||| Sbjct 3665 ATGCAGATTTTCGTCAAGACTCTTACCGGAAAGACAATCACTTTGGAGGTTGAGTCATCT 3606 Query 391110 GATAACATTGAAGCTAT-TAAACAAAAA-ATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 |||| || || | | |||| | || |||||||| |||||||| ||||| ||||||| Sbjct 3605 GATACTATCGA--CAACGTAAAGAGCAAGATTCAAGACAAGGAAGGCATTCCACCTGATC 3548 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 |||||||| | || ||| | || || || | || ||||| | || || |||| || | Sbjct 3547 AACAACGTCTCATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGTACCCTGTCGGACTACA 3488 Query 391228 ATATTGATAAGGA 391240 | ||| | ||||| Sbjct 3487 ACATTCAAAAGGA 3475 >seq5057 Length=18684 Score = 107 bits (118), Expect = 8e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 420808 GTAAATACAACAGTTTTTGTAGGCATATTTACACCAACAGAAAAAGTTTCAGTTGCTAAC 420867 |||||||| |||||||||| ||||||||| | |||| ||| || ||||| || || || Sbjct 14619 GTAAATACGACAGTTTTTGCAGGCATATTCAGGCCAATAGAGAATGTTTCTGTCGCAAAA 14560 Query 420868 AAAACTTTAATTAAttttt-ttGAATAAAGAATTTCAACAATTTCTTTTAAAATAGGAAT 420926 | || || ||||| |||| ||||| |||||||||||| | ||||| ||||| || | Sbjct 14559 AGTACCTTGATTAAATTTTCTTGAA-AAAGAATTTCAATTGTCTCTTTCAAAATTGGCAA 14501 Query 420927 TATACCAGAATGATGA 420942 | ||||||||||||| Sbjct 14500 AAGACCAGAATGATGA 14485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975532469463260