Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq4570 113 3e-19
seq78 111 1e-18
seq4803 100 2e-15
seq5547 98.7 8e-15
>seq4570
Length=38393
Score = 113 bits (124), Expect = 3e-19
Identities = 125/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914
|| || || ||||| || | ||||||||||||||||| ||||||||| | || || |||
Sbjct 600 GGAAAGGAGGGTCGACTTCGTGGAAATTTGATGGGAAAGCGTGTCGATTTCTCAGCGCGT 659
Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974
|| || || ||| ||| || ||| || ||||| | ||||| |||||||| | | |||
Sbjct 660 ACTGTCATCACTGGTGACCCTAATCTTTCTCTCGACGAAGTCGGTGTTCCACGAAGTATC 719
Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 669021
|||| || ||| || ||| ||| | |||||| || ||||||||
Sbjct 720 GCTAGAATTCTCACATTTCCCGAGACTGTAACGCCACTCAATATTGA 766
>seq78
Length=25977
Score = 111 bits (122), Expect = 1e-18
Identities = 249/369 (67%), Gaps = 5/369 (1%)
Strand=Plus/Plus
Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333
||||| |||||||| | ||| |||||||| || |||||||| || || | | ||||||
Sbjct 24273 ATACCGTTGGCATCAATATCGAATGTGACCTCGATTTGAGGAACACCACGTGGTGCAGGT 24332
Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393
||||| || | | ||| | |||| || ||||| || ||| || || |||
Sbjct 24333 GGGATACCAGTGAGTTCGAATTTGCCCATCAAGTTGTTATCCTTGGTGCGTTGACGCTCA 24392
Query 517394 CCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452
|||||||| | ||| || ||| || ||| ||| || || || | || | || ||
Sbjct 24393 CCCTCGAATACTTGAATCAGT-ACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAAACCTC 24451
Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512
||| || || ||| || || ||||||| ||| | |||||||| ||||| ||
Sbjct 24452 GGACTTCTTGGTAGGGATGGTGGTGTTTCGGGGAATGAGCTTGGTCATCTGTCCACCAGC 24511
Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 517570
|| || | ||| ||||| | || | |||||| | || | || | || | | ||
Sbjct 24512 AGTCTCGATACCGAGAGACAATGGGGCGACATCGAGAAGAAGGATCTCGTTGGTGGACTT 24571
Query 517571 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629
|| | || | |||| ||||| || || || | |||||||| ||||||||||| ||
Sbjct 24572 GGATGAGGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTC 24631
Query 517630 ATCAGGATT 517638
|||||| ||
Sbjct 24632 ATCAGGGTT 24640
Score = 93.3 bits (102), Expect = 3e-13
Identities = 189/281 (67%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074
|||||||| || || || || ||||| ||||| | ||| | || | || | | ||
Sbjct 25451 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTAACC 25510
Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134
| ||| | || || || | | ||| |||| ||||| ||||| ||||| | |||
Sbjct 25511 TCGAAGATACCTTCCTCGATGGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 25570
Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194
|| || || || || ||| || || || || | ||| || |||| || ||
Sbjct 25571 AAGATGAGAACGTTACGTTCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCT 25630
Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254
|| || || || ||||| ||||| | ||| |||||||||||||| || || || ||
Sbjct 25631 GCGGTAGGCTCGTTAATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCGTCCTTT 25690
Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295
|||||||| | ||| || ||| | || ||||| || || ||
Sbjct 25691 GTGGCTTGACGTTGAGAGTCGGTGAAGTATGCTGGGACGGT 25731
>seq4803
Length=18444
Score = 100 bits (110), Expect = 2e-15
Identities = 147/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562
||| ||||| || || ||||| || | || ||| ||| || || || |||| | ||
Sbjct 152 ACCGATTAAACGCTTAGCATCGAAGACGGTGTTGTATGGGTTCATAGCGACTTGGTTCTT 211
Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622
||| ||||||||||||| | | || || || || || | ||| | || ||||| || ||
Sbjct 212 GGCGGCATCTCCAATCAAACGCTCAGTATCGGTGAAAGCAACGAACGAAGGAGTGGTTCG 271
Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682
|| ||||| ||||| ||||||||||| | | | ||| | | | ||||||||||
Sbjct 272 GTTTCCTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGATACCTACACAAGA 331
Query 518683 AAAAGTTGTTCCTAAATCAATACCAATA 518710
| || || || ||||| ||||| |||
Sbjct 332 GTAGGTGGTACCCAAATCGATACCGATA 359
>seq5547
Length=23933
Score = 98.7 bits (108), Expect = 8e-15
Identities = 192/283 (68%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086
|| ||||||| ||||||||| | ||| | || | ||||| | || ||| | |||
Sbjct 9451 TCGAAATCTTGACCTCCCAAGTGAGTGTCACCAGCAGTAGCCTTAACGGTGAAGACACCA 9510
Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146
||| || ||| || | ||||| ||||||||||| | |||| | || || ||
Sbjct 9511 CCTTGAATGTTCAAGAGGGAAACATCGAAAGTTCCACCACCGAGATCATAGATGAGAACG 9570
Query 518147 TTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201
|| || |||| |||| ||| | ||||||| || || | ||||||||||| |
Sbjct 9571 TTTCGCTCCTTGT--TGGTCTTTCCAGCACCAAGACCGTATGCGATGGCAGCAGCAGTGG 9628
Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261
|||| ||||| || | | || || ||||| ||||| || ||||| || || || |
Sbjct 9629 GTTCGTTAATGATACGGAGGACGTTGAGACCGGCAATGGCACCAGCATCCTTGGTAGCCT 9688
Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304
| | ||| ||||| || || || |||||||| || |||||
Sbjct 9689 GACGTTGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGC 9731
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780457916905570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |