Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4570 113 3e-19 seq78 111 1e-18 seq4803 100 2e-15 seq5547 98.7 8e-15 >seq4570 Length=38393 Score = 113 bits (124), Expect = 3e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 || || || ||||| || | ||||||||||||||||| ||||||||| | || || ||| Sbjct 600 GGAAAGGAGGGTCGACTTCGTGGAAATTTGATGGGAAAGCGTGTCGATTTCTCAGCGCGT 659 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCAATGAAGTTGGTGTTCCTCTTATTATT 668974 || || || ||| ||| || ||| || ||||| | ||||| |||||||| | | ||| Sbjct 660 ACTGTCATCACTGGTGACCCTAATCTTTCTCTCGACGAAGTCGGTGTTCCACGAAGTATC 719 Query 668975 GCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGA 669021 |||| || ||| || ||| ||| | |||||| || |||||||| Sbjct 720 GCTAGAATTCTCACATTTCCCGAGACTGTAACGCCACTCAATATTGA 766 >seq78 Length=25977 Score = 111 bits (122), Expect = 1e-18 Identities = 249/369 (67%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 ||||| |||||||| | ||| |||||||| || |||||||| || || | | |||||| Sbjct 24273 ATACCGTTGGCATCAATATCGAATGTGACCTCGATTTGAGGAACACCACGTGGTGCAGGT 24332 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | ||| | |||| || ||||| || ||| || || ||| Sbjct 24333 GGGATACCAGTGAGTTCGAATTTGCCCATCAAGTTGTTATCCTTGGTGCGTTGACGCTCA 24392 Query 517394 CCCTCGAAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 |||||||| | ||| || ||| || ||| ||| || || || | || | || || Sbjct 24393 CCCTCGAATACTTGAATCAGT-ACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAAACCTC 24451 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 ||| || || ||| || || ||||||| ||| | |||||||| ||||| || Sbjct 24452 GGACTTCTTGGTAGGGATGGTGGTGTTTCGGGGAATGAGCTTGGTCATCTGTCCACCAGC 24511 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTT 517570 || || | ||| ||||| | || | |||||| | || | || | || | | || Sbjct 24512 AGTCTCGATACCGAGAGACAATGGGGCGACATCGAGAAGAAGGATCTCGTTGGTGGACTT 24571 Query 517571 TCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 || | || | |||| ||||| || || || | |||||||| ||||||||||| || Sbjct 24572 GGATGAGGTGTCACCAGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTC 24631 Query 517630 ATCAGGATT 517638 |||||| || Sbjct 24632 ATCAGGGTT 24640 Score = 93.3 bits (102), Expect = 3e-13 Identities = 189/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 |||||||| || || || || ||||| ||||| | ||| | || | || | | || Sbjct 25451 ACAAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTAACC 25510 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | ||| | || || || | | ||| |||| ||||| ||||| ||||| | ||| Sbjct 25511 TCGAAGATACCTTCCTCGATGGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCG 25570 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || || || || ||| || || || || | ||| || |||| || || Sbjct 25571 AAGATGAGAACGTTACGTTCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCT 25630 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || || || ||||| ||||| | ||| |||||||||||||| || || || || Sbjct 25631 GCGGTAGGCTCGTTAATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCGTCCTTT 25690 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 |||||||| | ||| || ||| | || ||||| || || || Sbjct 25691 GTGGCTTGACGTTGAGAGTCGGTGAAGTATGCTGGGACGGT 25731 >seq4803 Length=18444 Score = 100 bits (110), Expect = 2e-15 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 ||| ||||| || || ||||| || | || ||| ||| || || || |||| | || Sbjct 152 ACCGATTAAACGCTTAGCATCGAAGACGGTGTTGTATGGGTTCATAGCGACTTGGTTCTT 211 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||||||||||| | | || || || || || | ||| | || ||||| || || Sbjct 212 GGCGGCATCTCCAATCAAACGCTCAGTATCGGTGAAAGCAACGAACGAAGGAGTGGTTCG 271 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || ||||| ||||| ||||||||||| | | | ||| | | | |||||||||| Sbjct 272 GTTTCCTTGGTCATTGGCAATAATTTCGATTCTGTCATCTCTGAAGATACCTACACAAGA 331 Query 518683 AAAAGTTGTTCCTAAATCAATACCAATA 518710 | || || || ||||| ||||| ||| Sbjct 332 GTAGGTGGTACCCAAATCGATACCGATA 359 >seq5547 Length=23933 Score = 98.7 bits (108), Expect = 8e-15 Identities = 192/283 (68%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 || ||||||| ||||||||| | ||| | || | ||||| | || ||| | ||| Sbjct 9451 TCGAAATCTTGACCTCCCAAGTGAGTGTCACCAGCAGTAGCCTTAACGGTGAAGACACCA 9510 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 ||| || ||| || | ||||| ||||||||||| | |||| | || || || Sbjct 9511 CCTTGAATGTTCAAGAGGGAAACATCGAAAGTTCCACCACCGAGATCATAGATGAGAACG 9570 Query 518147 TTCATTTCTTTGTCTTGGTTTTT-----ATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || || |||| |||| ||| | ||||||| || || | ||||||||||| | Sbjct 9571 TTTCGCTCCTTGT--TGGTCTTTCCAGCACCAAGACCGTATGCGATGGCAGCAGCAGTGG 9628 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 |||| ||||| || | | || || ||||| ||||| || ||||| || || || | Sbjct 9629 GTTCGTTAATGATACGGAGGACGTTGAGACCGGCAATGGCACCAGCATCCTTGGTAGCCT 9688 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 | | ||| ||||| || || || |||||||| || ||||| Sbjct 9689 GACGTTGGTTGTCGTTGAAGTAGGCTGGAACAGTGATGACGGC 9731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780457916905570