Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq78 167 3e-36
seq4803 138 1e-27
seq5020 114 2e-20
seq4887 93.3 5e-14
seq5263 84.2 3e-11
>seq78
Length=25977
Score = 167 bits (184), Expect = 3e-36
Identities = 337/495 (68%), Gaps = 5/495 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || || || | || || || |||||||||
Sbjct 25463 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTAACCTCGAAGATACCT 25522
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || ||| | || | || ||||| || || || ||||| || || || ||||| |||
Sbjct 25523 TCCTCGATGGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGAACG 25582
Query 7577 TT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
|| ||| || | || ||||| || | |||||| || || || || || || || ||
Sbjct 25583 TTACGT-TCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCTGCGGTAGGCTC 25641
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
||||| || | ||| ||| || |||||||| | || || || || ||||| ||
Sbjct 25642 GTTAATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCGTCCTTTGTGGCTTGACG 25701
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
||| || ||| | ||||| || ||||| || ||||| |||| |||| | ||| ||
Sbjct 25702 TTGAGAGTCGGTGAAGTATGCTGGGACGGTGACGACAGCGTTGTTGACAGTTCCACCAAG 25761
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815
|| | || || | ||| |||| ||| | ||||| ||||| ||||| |||| |
Sbjct 25762 GTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGACCATAGATGAGATCTCCTCAGGTGT 25821
Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875
|| || || || || || || ||||| ||||| | || || || |||||| |
Sbjct 25822 GAATTGCTTTTGCTCTCCCTTGAACTCAACCTCAATGACTGGCTT-TC--CAGCACGGTC 25878
Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935
|| ||||| | | ||| ||||| ||| ||||||| | || | ||||| |
Sbjct 25879 AATGACCTTGAATGGGAAATGCTTCATGTCGGCTTGGACTTCAGCATCTGCGAACTTGCG 25938
Query 7936 TCCGATAAGACGCTT 7950
||||| | ||||||
Sbjct 25939 ACCGATTAAACGCTT 25953
Score = 141 bits (156), Expect = 1e-28
Identities = 530/828 (64%), Gaps = 15/828 (2%)
Strand=Plus/Plus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| ||| | || || || || || || | ||| || || || || || ||
Sbjct 24137 TTCATCCTCAGCCTTGTATTTCTCGGCTTCAGCCAACATACGCTCGATCTCCTCCTTGGA 24196
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
|| | ||||| || || || || ||||| | || || || | |||| ||
Sbjct 24197 CAAGCGACCCTTGTCGTTGGTGATGACGATCTTGTTAGACTTTCCGGTTCCCTTCTCAAG 24256
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
|||| || |||| ||||| || ||||||| |||||| | || | ||||| ||
Sbjct 24257 AGCAGAGACGTTCATGATACCGTTGGCATCAATATCGAATGTGACCTCGATTTGAGGAAC 24316
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||| | ||||| | ||| ||||| || | || ||| | || | || |||||||| |
Sbjct 24317 ACCACGTGGTGCAGGTGGGATACCAGTGAGTTCGAATTTGCCCATCAAGTTGTTATCCTT 24376
Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867
| | ||| ||||| || | |||| ||| || ||||||| || ||
Sbjct 24377 GGTGCGTTGACGCTCACCCTCGAATACTTGAATCAGTACACCAGGTTGGTTGTCAGAGAA 24436
Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927
|| ||||| | | ||||| | || || || || |||| ||||| | | |||
Sbjct 24437 GGTGGAGAAAACCTCGGACTTCTTGGTAGGGATGGTGGTGTTTCGGGGAATGAGCTTGGT 24496
Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987
||| ||||| ||| |||| || ||||||| || | || || ||| | ||
Sbjct 24497 CATCTGTCCACCAGCAGTCTCGATACCGAGAGACAATGGGGCGACATC---GAGAAGAAG 24553
Query 6988 G-TCT------TGAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038
| ||| || || ||| | | ||||| | | ||||| || ||||| |
Sbjct 24554 GATCTCGTTGGTGGACTTGGATGAGGTG---TCACCAGAGAGAATGGCAGCCTGGACGGC 24610
Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098
|| |||||||| || |||||||| ||||| || | || || | || |||||||| ||
Sbjct 24611 AGCACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAA 24670
Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158
|| || | | | | ||| || ||||| || || || |||||||| | |||||
Sbjct 24671 GTAGTCGGTAATGAGCTTTTGGATACGTGGGATACGGGTGGAACCACCGACAAGGACGAT 24730
Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218
|| | ||| | |||||||| ||||| | || || ||||| || |
Sbjct 24731 CTCGTGAACTCTGGATTTATCAATCTTGGCATCGGCGAGGACACGGTCGACTGGAGTGGT 24790
Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278
|||||| | |||| || |||||||||||||| |||||||| ||||| || ||
Sbjct 24791 GGTGGAACGGAAGAGGTCCTGGCAGAGTTCCTCAAAACGGGCACGGGTGATGGAGGTGTA 24850
Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338
||| || | || ||| | | || || ||||| |||| || || || | || || |
Sbjct 24851 GAAGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGAGGTCTGGGCGGAAGATGAAAG 24910
Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386
|| ||||| || ||||| || || || || | ||||||||| |||||
Sbjct 24911 AGTACGCTTGGCACGCTCGCATGCTGTGCGGAGACGACGAAGAGCACG 24958
>seq4803
Length=18444
Score = 138 bits (152), Expect = 1e-27
Identities = 246/356 (69%), Gaps = 6/356 (2%)
Strand=Plus/Plus
Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849
||||| ||||| ||||| |||| | || || || || || || || ||||| |||
Sbjct 9 ACCATAGATGAGATCTCCTCAGGTGTGAATTGCTTTTGCTCTCCCTTGAACTCAACCTCA 68
Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909
|| | || || ||| ||||| | || ||||| | | ||| ||||| ||| ||
Sbjct 69 ATGACTGGCTT-TCC--AGCACGGTCAATGACCTTGAATGGGAAATGCTTCATGTCGGCT 125
Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969
||||| | || | ||||| | ||||| | |||||| ||||| || || |||||
Sbjct 126 TGGACTTCAGCATCTGCGAACTTGCGACCGATTAAACGCTTAGCATCGAAGACGGTGTTG 185
Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029
| |||||||| || ||||||||| || || || || || | ||| ||| ||| |
Sbjct 186 TATGGGTTCATAGCGACTTGGTTCTTGGCGGCATCTCCAATCAAACGCTCAGTAT---CG 242
Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089
|| || || ||| |||| || || ||||| || |||||||| || ||||||||||| |
Sbjct 243 GTGAAAGCAACGAACGAAGGAGTGGTTCGGTTTCCTTGGTCATTGGCAATAATTTCGATT 302
Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145
| ||| | | ||| || || || || || || || || ||||| ||||||||
Sbjct 303 CTGTCATCTCTGAAGATACCTACACAAGAGTAGGTGGTACCCAAATCGATACCGAT 358
>seq5020
Length=13931
Score = 114 bits (126), Expect = 2e-20
Identities = 235/342 (69%), Gaps = 18/342 (5%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||||||||| |||||||||||||| || ||| | ||||||||| |||| ||
Sbjct 1901 ATCGAAATCTTCACCTCCCAAGTGTGTATCACCGTTGGTAGATTTGACTTCGAAGACAC- 1843
Query 7516 TCCTTC--AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573
||||| ||| | | | || | |||||| ||||| ||||||| || | || |
Sbjct 1842 -CCTTCTGAATCTCGAGAACAGAGATATCAAAAGTACCTCCACCCAAATCGTA---GACT 1787
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
|| | | | ||| || | ||| || || || || || | || || || |||||
Sbjct 1786 GCGATGATCTTGTCCTCATCTTTC---TCAAGGCCATATGCAAGTGCAGCTGCGGTTGGC 1730
Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691
|| || | | | |||| ||||| || ||||| ||| | |||||||| ||||| |
Sbjct 1729 TCGTTGACGACTCTAAGAACGTTCAAACCGGCAAT--TTGACCAGCATCTTTGGTCGCCT 1672
Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751
| ||||| || ||||| ||||| || || || || || || |||| || |||
Sbjct 1671 GGCGTTGGGAGTCGTTGAAGTAAGCGGGAACAGTGACAACGGCGTTTTGAACAGGCTTTG 1612
Query 7752 CGAGATACGATTCCGCGATATCTTTCA--TTTTGGTAAGAAC 7791
|||||| | |||||| | || |||| |||||| |||||
Sbjct 1611 TGAGATATGCTTCCGCAGTCTCCTTCATCTTTTGG--AGAAC 1572
>seq4887
Length=16554
Score = 93.3 bits (102), Expect = 5e-14
Identities = 337/523 (64%), Gaps = 17/523 (3%)
Strand=Plus/Minus
Query 105558 TTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCT 105617
|||||| || |||||||| | |||||||||||| | ||| | ||||| || || ||
Sbjct 10777 TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCT 10718
Query 105618 CGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCA 105677
| || || | || || ||| || | || | || || | | ||| || |||||
Sbjct 10717 AACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCA 10658
Query 105678 TGGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATA 105731
|||||| | || || |||| | || | | ||| || |||| | ||||||
Sbjct 10657 TGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTTGTTACCACCTTGGTCGACATA 10601
Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791
||| ||||| ||| | ||||| | ||| |||| ||||| | || | || |||||
Sbjct 10600 TCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGT 10541
Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851
|| ||| | | | | ||||| | ||| | || | |||||||| |||||
Sbjct 10540 GCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGC 10481
Query 105852 CCACTT---ACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATC 105908
||| | | ||| ||||| || | ||||| || ||||| || ||||||||
Sbjct 10480 GTTCTTTGAAATCATA---GCACAAATCTTCAAAGTATCATAGATACCATCAATACTATC 10424
Query 105909 TTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGA 105967
||||| | |||| ||||| || ||||| | || | ||| || ||||| ||| ||
Sbjct 10423 CTCCTTCATATCAATAAGGAAGCATGATGAAAGCTG-AGCCTGTGGAGTACCCGCAGAGA 10365
Query 105968 ACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGA 106027
| || ||||| | || || | || | || || | | | ||||||||| | |
Sbjct 10364 AGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGG 10305
Query 106028 CGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070
| |||||||| | || |||||||||| || || |||||
Sbjct 10304 CACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCAT 10262
>seq5263
Length=25422
Score = 84.2 bits (92), Expect = 3e-11
Identities = 161/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 11448 CTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAA 11507
||| ||||| ||||| ||||| || ||||| || ||||| ||| | | | | ||||
Sbjct 4177 CTTTCCAATGGCATCGATTTCGTCGATAAATATGATACAGGGTGTAGTCTTTCTGGCCAT 4236
Query 11508 TTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATG- 11566
| || | |||||| |||| || || || || || ||||||||||| ||| |
Sbjct 4237 GGCGAAAAGATCACGTACTCGAGAAGCTCCAACACCAACGAACATTTCAACAAACTCCGA 4296
Query 11567 ACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTG 11626
||| | ||||| || || || || |||||| || ||| | || |||||||||||
Sbjct 4297 ACCACTGACACT-AAAGAATGGCACCCCAGATTCGCCGGCTGTTGCCTTTGCTAAAAGTG 4355
Query 11627 TTTTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACC 11681
| ||||| ||||| || || | ||| | || || | || || ||||||||
Sbjct 4356 TCTTACCAGTACCCGGAGGCCCAGATAAGATAGCTCCGCGAGGAATCTTAGCACC 4410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635074486869800
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