Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq78 167 3e-36 seq4803 138 1e-27 seq5020 114 2e-20 seq4887 93.3 5e-14 seq5263 84.2 3e-11 >seq78 Length=25977 Score = 167 bits (184), Expect = 3e-36 Identities = 337/495 (68%), Gaps = 5/495 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || | || || || ||||||||| Sbjct 25463 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTAACCTCGAAGATACCT 25522 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || | || ||||| || || || ||||| || || || ||||| ||| Sbjct 25523 TCCTCGATGGTCAAGAGAGAGACATCGAAAGTTCCTCCACCAAGATCGAAGATGAGAACG 25582 Query 7577 TT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || ||| || | || ||||| || | |||||| || || || || || || || || Sbjct 25583 TTACGT-TCACCCTCGACCTTCTTGTCCAAACCGTAAGCAATGGCGGCTGCGGTAGGCTC 25641 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| || | ||| ||| || |||||||| | || || || || ||||| || Sbjct 25642 GTTAATGATTCTGAGAACGTTAAGACCAGCAATCAGACCAGCGTCCTTTGTGGCTTGACG 25701 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| || ||| | ||||| || ||||| || ||||| |||| |||| | ||| || Sbjct 25702 TTGAGAGTCGGTGAAGTATGCTGGGACGGTGACGACAGCGTTGTTGACAGTTCCACCAAG 25761 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | || || | ||| |||| ||| | ||||| ||||| ||||| |||| | Sbjct 25762 GTAAGCCTCAGCAGTCTCTCTCATCTTGACCAAGACCATAGATGAGATCTCCTCAGGTGT 25821 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || || || || || || || ||||| ||||| | || || || |||||| | Sbjct 25822 GAATTGCTTTTGCTCTCCCTTGAACTCAACCTCAATGACTGGCTT-TC--CAGCACGGTC 25878 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || ||||| | | ||| ||||| ||| ||||||| | || | ||||| | Sbjct 25879 AATGACCTTGAATGGGAAATGCTTCATGTCGGCTTGGACTTCAGCATCTGCGAACTTGCG 25938 Query 7936 TCCGATAAGACGCTT 7950 ||||| | |||||| Sbjct 25939 ACCGATTAAACGCTT 25953 Score = 141 bits (156), Expect = 1e-28 Identities = 530/828 (64%), Gaps = 15/828 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| ||| | || || || || || || | ||| || || || || || || Sbjct 24137 TTCATCCTCAGCCTTGTATTTCTCGGCTTCAGCCAACATACGCTCGATCTCCTCCTTGGA 24196 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | ||||| || || || || ||||| | || || || | |||| || Sbjct 24197 CAAGCGACCCTTGTCGTTGGTGATGACGATCTTGTTAGACTTTCCGGTTCCCTTCTCAAG 24256 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 |||| || |||| ||||| || ||||||| |||||| | || | ||||| || Sbjct 24257 AGCAGAGACGTTCATGATACCGTTGGCATCAATATCGAATGTGACCTCGATTTGAGGAAC 24316 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | ||||| | ||| ||||| || | || ||| | || | || |||||||| | Sbjct 24317 ACCACGTGGTGCAGGTGGGATACCAGTGAGTTCGAATTTGCCCATCAAGTTGTTATCCTT 24376 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 | | ||| ||||| || | |||| ||| || ||||||| || || Sbjct 24377 GGTGCGTTGACGCTCACCCTCGAATACTTGAATCAGTACACCAGGTTGGTTGTCAGAGAA 24436 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 || ||||| | | ||||| | || || || || |||| ||||| | | ||| Sbjct 24437 GGTGGAGAAAACCTCGGACTTCTTGGTAGGGATGGTGGTGTTTCGGGGAATGAGCTTGGT 24496 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| ||||| ||| |||| || ||||||| || | || || ||| | || Sbjct 24497 CATCTGTCCACCAGCAGTCTCGATACCGAGAGACAATGGGGCGACATC---GAGAAGAAG 24553 Query 6988 G-TCT------TGAACA--GATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 | ||| || || ||| | | ||||| | | ||||| || ||||| | Sbjct 24554 GATCTCGTTGGTGGACTTGGATGAGGTG---TCACCAGAGAGAATGGCAGCCTGGACGGC 24610 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || |||||||| || |||||||| ||||| || | || || | || |||||||| || Sbjct 24611 AGCACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAA 24670 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 || || | | | | ||| || ||||| || || || |||||||| | ||||| Sbjct 24671 GTAGTCGGTAATGAGCTTTTGGATACGTGGGATACGGGTGGAACCACCGACAAGGACGAT 24730 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || | ||| | |||||||| ||||| | || || ||||| || | Sbjct 24731 CTCGTGAACTCTGGATTTATCAATCTTGGCATCGGCGAGGACACGGTCGACTGGAGTGGT 24790 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 |||||| | |||| || |||||||||||||| |||||||| ||||| || || Sbjct 24791 GGTGGAACGGAAGAGGTCCTGGCAGAGTTCCTCAAAACGGGCACGGGTGATGGAGGTGTA 24850 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | || ||| | | || || ||||| |||| || || || | || || | Sbjct 24851 GAAGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGAGGTCTGGGCGGAAGATGAAAG 24910 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || ||||| || ||||| || || || || | ||||||||| ||||| Sbjct 24911 AGTACGCTTGGCACGCTCGCATGCTGTGCGGAGACGACGAAGAGCACG 24958 >seq4803 Length=18444 Score = 138 bits (152), Expect = 1e-27 Identities = 246/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 ||||| ||||| ||||| |||| | || || || || || || || ||||| ||| Sbjct 9 ACCATAGATGAGATCTCCTCAGGTGTGAATTGCTTTTGCTCTCCCTTGAACTCAACCTCA 68 Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 || | || || ||| ||||| | || ||||| | | ||| ||||| ||| || Sbjct 69 ATGACTGGCTT-TCC--AGCACGGTCAATGACCTTGAATGGGAAATGCTTCATGTCGGCT 125 Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 ||||| | || | ||||| | ||||| | |||||| ||||| || || ||||| Sbjct 126 TGGACTTCAGCATCTGCGAACTTGCGACCGATTAAACGCTTAGCATCGAAGACGGTGTTG 185 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 | |||||||| || ||||||||| || || || || || | ||| ||| ||| | Sbjct 186 TATGGGTTCATAGCGACTTGGTTCTTGGCGGCATCTCCAATCAAACGCTCAGTAT---CG 242 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 || || || ||| |||| || || ||||| || |||||||| || ||||||||||| | Sbjct 243 GTGAAAGCAACGAACGAAGGAGTGGTTCGGTTTCCTTGGTCATTGGCAATAATTTCGATT 302 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||| | | ||| || || || || || || || || ||||| |||||||| Sbjct 303 CTGTCATCTCTGAAGATACCTACACAAGAGTAGGTGGTACCCAAATCGATACCGAT 358 >seq5020 Length=13931 Score = 114 bits (126), Expect = 2e-20 Identities = 235/342 (69%), Gaps = 18/342 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||||||| |||||||||||||| || ||| | ||||||||| |||| || Sbjct 1901 ATCGAAATCTTCACCTCCCAAGTGTGTATCACCGTTGGTAGATTTGACTTCGAAGACAC- 1843 Query 7516 TCCTTC--AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 ||||| ||| | | | || | |||||| ||||| ||||||| || | || | Sbjct 1842 -CCTTCTGAATCTCGAGAACAGAGATATCAAAAGTACCTCCACCCAAATCGTA---GACT 1787 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | | | ||| || | ||| || || || || || | || || || ||||| Sbjct 1786 GCGATGATCTTGTCCTCATCTTTC---TCAAGGCCATATGCAAGTGCAGCTGCGGTTGGC 1730 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 || || | | | |||| ||||| || ||||| ||| | |||||||| ||||| | Sbjct 1729 TCGTTGACGACTCTAAGAACGTTCAAACCGGCAAT--TTGACCAGCATCTTTGGTCGCCT 1672 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | ||||| || ||||| ||||| || || || || || || |||| || ||| Sbjct 1671 GGCGTTGGGAGTCGTTGAAGTAAGCGGGAACAGTGACAACGGCGTTTTGAACAGGCTTTG 1612 Query 7752 CGAGATACGATTCCGCGATATCTTTCA--TTTTGGTAAGAAC 7791 |||||| | |||||| | || |||| |||||| ||||| Sbjct 1611 TGAGATATGCTTCCGCAGTCTCCTTCATCTTTTGG--AGAAC 1572 >seq4887 Length=16554 Score = 93.3 bits (102), Expect = 5e-14 Identities = 337/523 (64%), Gaps = 17/523 (3%) Strand=Plus/Minus Query 105558 TTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCT 105617 |||||| || |||||||| | |||||||||||| | ||| | ||||| || || || Sbjct 10777 TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCT 10718 Query 105618 CGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCA 105677 | || || | || || ||| || | || | || || | | ||| || ||||| Sbjct 10717 AACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCA 10658 Query 105678 TGGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATA 105731 |||||| | || || |||| | || | | ||| || |||| | |||||| Sbjct 10657 TGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTTGTTACCACCTTGGTCGACATA 10601 Query 105732 TCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGT 105791 ||| ||||| ||| | ||||| | ||| |||| ||||| | || | || ||||| Sbjct 10600 TCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGT 10541 Query 105792 TCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGC 105851 || ||| | | | | ||||| | ||| | || | |||||||| ||||| Sbjct 10540 GCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATGTTGAGACCAATACCACCAGC 10481 Query 105852 CCACTT---ACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATC 105908 ||| | | ||| ||||| || | ||||| || ||||| || |||||||| Sbjct 10480 GTTCTTTGAAATCATA---GCACAAATCTTCAAAGTATCATAGATACCATCAATACTATC 10424 Query 105909 TTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGA 105967 ||||| | |||| ||||| || ||||| | || | ||| || ||||| ||| || Sbjct 10423 CTCCTTCATATCAATAAGGAAGCATGATGAAAGCTG-AGCCTGTGGAGTACCCGCAGAGA 10365 Query 105968 ACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAACGCTTCGTATGTTTCCAGGA 106027 | || ||||| | || || | || | || || | | | ||||||||| | | Sbjct 10364 AGAGTGTTGGAGAAGCGTGTGTAAAGTATTTGTTGGACATCAAGTTGTATGTTTCGATGG 10305 Query 106028 CGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070 | |||||||| | || |||||||||| || || ||||| Sbjct 10304 CACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCAT 10262 >seq5263 Length=25422 Score = 84.2 bits (92), Expect = 3e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 11448 CTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTGCCAA 11507 ||| ||||| ||||| ||||| || ||||| || ||||| ||| | | | | |||| Sbjct 4177 CTTTCCAATGGCATCGATTTCGTCGATAAATATGATACAGGGTGTAGTCTTTCTGGCCAT 4236 Query 11508 TTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATG- 11566 | || | |||||| |||| || || || || || ||||||||||| ||| | Sbjct 4237 GGCGAAAAGATCACGTACTCGAGAAGCTCCAACACCAACGAACATTTCAACAAACTCCGA 4296 Query 11567 ACCCCGAACACTGAATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGCTAAAAGTG 11626 ||| | ||||| || || || || |||||| || ||| | || ||||||||||| Sbjct 4297 ACCACTGACACT-AAAGAATGGCACCCCAGATTCGCCGGCTGTTGCCTTTGCTAAAAGTG 4355 Query 11627 TTTTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACC 11681 | ||||| ||||| || || | ||| | || || | || || |||||||| Sbjct 4356 TCTTACCAGTACCCGGAGGCCCAGATAAGATAGCTCCGCGAGGAATCTTAGCACC 4410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635074486869800