Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4887 233 2e-56 seq4745 163 4e-35 >seq4887 Length=16554 Score = 233 bits (258), Expect = 2e-56 Identities = 1144/1794 (64%), Gaps = 51/1794 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 ||||| | ||| ||||||| || || | ||||| || || || |||||||| || Sbjct 10247 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCC 10306 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || |||||| || ||||||| || | ||||| | ||||| |||||| Sbjct 10307 ATCGAAACATACAACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACACTCTTC 10366 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || ||||| ||| | || | || || |||||||||| | ||||||||| Sbjct 10367 TCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGAT 10426 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || |||| || || | ||| | | ||||| || |||||| |||||| Sbjct 10427 AGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGT 10486 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGGTACAAA 111910 ||||| || | ||||||| || | || | | || | ||| ||| ||||| Sbjct 10487 GGTATTGGTCTCAACATCCACAGAATCCGTGCTA-CTGGTGCCTACATTGCAGGCACAAA 10545 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| | || | ||||| |||| |||||||| || || ||| ||| || | ||||| Sbjct 10546 CGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGT 10605 Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTATCGCA------GTCTATCTTGAGCCATGGCA 112024 |||||| ||| | |||| | || ||| || || ||||| |||||||| Sbjct 10606 CGACCAAGGTGG---TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCA 10662 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084 |||||| || | |||||| | || | || ||||| || | ||||| | | Sbjct 10663 TGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGC 10722 Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 ||||||||||||| || ||||||||||||||||||||||||||| | ||||| ||| Sbjct 10723 ACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 10782 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || | ||| | ||| | || || || | || || | | |||| | ||||| Sbjct 10783 CGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGT--CGGGCGACTGCGACGGTG 112262 || || || || ||||| | |||||| | || || || || | ||| | Sbjct 10843 TGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGGTCG--TAAGACCATC 10900 Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 ||| | | ||| | | || || || | || || |||||||| | || | Sbjct 10901 AAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTC 10960 Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382 |||||||||||||| || || ||| |||||||||| |||||||| | || ||| Sbjct 10961 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACAATCCGT 11020 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442 || |||||| | || ||||||||| | |||| | | |||||| ||| ||| Sbjct 11021 AGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGCTTGCTGT 11080 Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 112500 ||| | || || || |||||||| | | ||| | || | | | || | ||||| Sbjct 11081 AACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--CATGGCTGAGGGAACTTATGATT 11138 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 |||| || || || || || ||| | |||| | |||| ||||||| | Sbjct 11139 TCCAAAAGCTTCATGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATTGACA 11198 Query 112561 GAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 || | || || || ||| ||| | || ||| | | ||||| || |||| | Sbjct 11199 TCAACTACTATCCTGTCCCAGA-AGCTAGAAAGAGTAACTTCCGTCACCGACCTATTGCT 11257 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCC 112676 | ||||| || ||||| || |||| ||| | ||| || | |||| ||||| Sbjct 11258 GTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGC---CATTCGATTCA 11314 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA- 112735 || || || | | || | || || ||||| || || |||| || ||||| Sbjct 11315 CCTGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGC-CTTGAC 11373 Query 112736 --GGCGAGTTCGGAGTTGGC-AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 | |||| || ||| | || |||| || |||||||| |||| || |||||||| Sbjct 11374 TTCGTCTGTTCAGA-TTGCCAAGGAGTTG--GGCCCATATGAGACCTACGAAGGTTCTCC 11430 Query 112793 AGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 112851 || ||| |||||| | ||||||| ||||||||||| | | | | || || | Sbjct 11431 AGTTTC-CAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATCTCTGGG 11489 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 | ||||| |||||| || |||||| | | ||| |||| |||||| | | | | Sbjct 11490 ATTGGGATAGCCTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTTGTTG 11549 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || |||||||| ||| || | ||||| | ||| || ||||| || || || | Sbjct 11550 CTCCTATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTCGAGCCAT 11609 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC---A 113028 |||| | ||||||||| | | || || |||||||| |||||||| Sbjct 11610 ACACTTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTCAACCCAT 11669 Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 113088 || |||| |||| || || || || || ||||| | | |||||| | | || Sbjct 11670 GGCTTCTCAAGGATTTGGTC---GACATGGGACTTTGGTCTGACAACATGAAGAACCGCA 11726 Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | | | ||||| || |||||||| ||| | || |||| |||| | ||| Sbjct 11727 TCATCGCTGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAGGCTC 11786 Query 113149 TGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG---ACATGGCCGCAGATC 113205 | ||| || |||||||||||| | || || ||||| | ||||||||||| | Sbjct 11787 TCTACAAGACTGTTTGGGAAATC--TCTCAACGA-AACATTGTTCAGATGGCCGCAGACC 11843 Query 113206 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGT 113265 ||||| ||||| |||||| |||| ||||| | |||| | || || ||| Sbjct 11844 GTGGTGCTTTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATGG 11903 Query 113266 CCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATT 113325 |||| || |||| ||||| | | ||||| |||||||| || || ||||| | Sbjct 11904 GCAAGATCACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGGAATGTACT 11963 Query 113326 ACCTCCGATCTAAGGCAAAGGCGCGC-CCAATTCAGTTCAGTCTTGAACCAGAA 113378 | ||||| ||| ||| | ||| |||||||| |||| |||| | |||| Sbjct 11964 ATCTCCGTACTATGGCTGCTTC-CGCACCAATTCAATTCACCGTTGATCAAGAA 12016 >seq4745 Length=15183 Score = 163 bits (180), Expect = 4e-35 Identities = 357/525 (68%), Gaps = 26/525 (5%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGA---TACAAAG 102164 |||||||| || ||| | ||||| || || |||||| | | ||| |||| || || Sbjct 9208 ACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAAC 9149 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || | |||||||| | || ||| ||||||| || ||||| |||||||||||| | Sbjct 9148 TC---TACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGT 9092 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||||||||| | |||||| |||||||||||||| || | ||| | |||||| ||| Sbjct 9091 GGTTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTT 9032 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTC 102344 ||||||||||| ||||| ||||||||||| || || || || || || || || Sbjct 9031 TCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGC-CTG--CCTGCTC 8975 Query 102345 AAATTATTGCGTATTAAACCAACGACTGAG---ACTA----TTCATTCTATTGTTAAGGA 102397 || | || || || || || | || || | |||| | || ||| || Sbjct 8974 ---TTCTCGC-ACTTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGA 8919 Query 102398 AGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTAT 102457 || || |||||||| | | |||| | ||| || |||||||| |||||| | || || Sbjct 8918 GGCTGTCCAGATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCAT 8859 Query 102458 GAATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGA 102516 ||| || || |||| |||| ||||||| || | || | || ||| || Sbjct 8858 GAACTCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGC--- 8802 Query 102517 TCGGGGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAG 102574 || ||| || ||| || |||||||| ||||||||||| |||||| Sbjct 8801 TCTTGGTAATGAGAAGGTTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTC 8742 Query 102575 CCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619 |||| || ||||| ||||||||||| ||| | ||||| ||||| Sbjct 8741 TCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620685408088400