Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 233 2e-56
seq4745 163 4e-35
>seq4887
Length=16554
Score = 233 bits (258), Expect = 2e-56
Identities = 1144/1794 (64%), Gaps = 51/1794 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
||||| | ||| ||||||| || || | ||||| || || || |||||||| ||
Sbjct 10247 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGATGATATTGAAAGTGCC 10306
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| || |||||| || ||||||| || | ||||| | ||||| ||||||
Sbjct 10307 ATCGAAACATACAACTTGATGTCCAACAAATACTTTACACACGCTTCTCCAACACTCTTC 10366
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
|| ||||| ||| | || | || || |||||||||| | |||||||||
Sbjct 10367 TCTGCGGGTACTCCACAGGCTCAGCTTTCATCATGCTTCCTTATTGATATGAAGGAGGAT 10426
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| |||| || || | ||| | | ||||| || |||||| ||||||
Sbjct 10427 AGTATTGATGGTATCTATGATACTTTGAAGATTTGTGCTATGATTTCAAAGAACGCTGGT 10486
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGGTACAAA 111910
||||| || | ||||||| || | || | | || | ||| ||| |||||
Sbjct 10487 GGTATTGGTCTCAACATCCACAGAATCCGTGCTA-CTGGTGCCTACATTGCAGGCACAAA 10545
Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970
||| | || | ||||| |||| |||||||| || || ||| ||| || | |||||
Sbjct 10546 CGGTAACTCTAACGGTATCGTTCCTATGCTTCGAGTTTTCAACAACACCGCTAGATATGT 10605
Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTATCGCA------GTCTATCTTGAGCCATGGCA 112024
|||||| ||| | |||| | || ||| || || ||||| ||||||||
Sbjct 10606 CGACCAAGGTGG---TAACAAGCGCCCTGGTGCATTTGCCGTTTACCTTGAACCATGGCA 10662
Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTG 112084
|||||| || | |||||| | || | || ||||| || | ||||| | |
Sbjct 10663 TGCGGATGTCTTTGAGTTCTTGGACCTCCGAAAGAACCACGGCAAAGAGGAAGTTAGAGC 10722
Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144
||||||||||||| || ||||||||||||||||||||||||||| | ||||| |||
Sbjct 10723 ACGCGATCTCTTCTATGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAA 10782
Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204
|| | ||| | ||| | || || || | || || | | |||| | |||||
Sbjct 10783 CGGAGACTGGACACTCATGTGCCCTAACGAATGTCCAGGCTTGGCTGATGTCTATGGTGA 10842
Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGT--CGGGCGACTGCGACGGTG 112262
|| || || || ||||| | |||||| | || || || || | ||| |
Sbjct 10843 TGAATTCGAGGCTCTCTATGAAGGTTACGAGAGACAAGGTAAAGGTCG--TAAGACCATC 10900
Query 112263 CCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322
||| | | ||| | | || || || | || || |||||||| | || |
Sbjct 10901 AAGGCTCAAAAGCTTTGGTATTCCATCCTTGAGGCCCAGACTGAGACTGGAAACCCTTTC 10960
Query 112323 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 112382
|||||||||||||| || || ||| |||||||||| |||||||| | || |||
Sbjct 10961 ATGCTTTACAAAGATGCTTGCAACAAAAAGAGTAACCAAAAGAACCTCGGCACAATCCGT 11020
Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 112442
|| |||||| | || ||||||||| | |||| | | |||||| ||| |||
Sbjct 11021 AGCTCCAACTTGTGCACAGAAATCGTCGAATACTCTGCACCGGATGAGGTTGCTTGCTGT 11080
Query 112443 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG--ACATTTGATT 112500
||| | || || || |||||||| | | ||| | || | | | || | |||||
Sbjct 11081 AACTTGGCTTCTATTGCTCTCCCAACCTTTGTCAA--CATGGCTGAGGGAACTTATGATT 11138
Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560
|||| || || || || || ||| | |||| | |||| ||||||| |
Sbjct 11139 TCCAAAAGCTTCATGAGGTCGTTCAAGTTGTTGTCAGAAACTTGAACAAGATTATTGACA 11198
Query 112561 GAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619
|| | || || || ||| ||| | || ||| | | ||||| || |||| |
Sbjct 11199 TCAACTACTATCCTGTCCCAGA-AGCTAGAAAGAGTAACTTCCGTCACCGACCTATTGCT 11257
Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATTCC 112676
| ||||| || ||||| || |||| ||| | ||| || | |||| |||||
Sbjct 11258 GTTGGTGTTCAGGGTCTTGCTGATGCCTTCCTGGCTCTCCGTTTGC---CATTCGATTCA 11314
Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA- 112735
|| || || | | || | || || ||||| || || |||| || |||||
Sbjct 11315 CCTGAGGCCAAACATCTTAACATCCAGATTTTCGAGACCATCTACCACGGTGC-CTTGAC 11373
Query 112736 --GGCGAGTTCGGAGTTGGC-AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792
| |||| || ||| | || |||| || |||||||| |||| || ||||||||
Sbjct 11374 TTCGTCTGTTCAGA-TTGCCAAGGAGTTG--GGCCCATATGAGACCTACGAAGGTTCTCC 11430
Query 112793 AGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 112851
|| ||| |||||| | ||||||| ||||||||||| | | | | || || |
Sbjct 11431 AGTTTC-CAAGGGTGAACTTCAATATGATATGTGGGGTGTTACTCCTACAGATCTCTGGG 11489
Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911
| ||||| |||||| || |||||| | | ||| |||| |||||| | | | |
Sbjct 11490 ATTGGGATAGCCTCAAGCAATCTATCAAGCAACATGGTATTCGCAACAGTTTGCTTGTTG 11549
Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971
| || |||||||| ||| || | ||||| | ||| || ||||| || || || |
Sbjct 11550 CTCCTATGCCAACTGCCAGTACATCTCAAATTCTCGGTTTCAACGAATGTTTCGAGCCAT 11609
Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC---A 113028
|||| | ||||||||| | | || || |||||||| ||||||||
Sbjct 11610 ACACTTCCAACATCTATTCCCGTCGTGTGCTGGCCGGAGAGTTCCAAGTTGTCAACCCAT 11669
Query 113029 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 113088
|| |||| |||| || || || || || ||||| | | |||||| | | ||
Sbjct 11670 GGCTTCTCAAGGATTTGGTC---GACATGGGACTTTGGTCTGACAACATGAAGAACCGCA 11726
Query 113089 TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148
| | | ||||| || |||||||| ||| | || |||| |||| | |||
Sbjct 11727 TCATCGCTGACGGTGGATCTATTCAAAACATTCCCAACATCCCAGCTGAACTCAAGGCTC 11786
Query 113149 TGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTG---ACATGGCCGCAGATC 113205
| ||| || |||||||||||| | || || ||||| | ||||||||||| |
Sbjct 11787 TCTACAAGACTGTTTGGGAAATC--TCTCAACGA-AACATTGTTCAGATGGCCGCAGACC 11843
Query 113206 GTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGT 113265
||||| ||||| |||||| |||| ||||| | |||| | || || |||
Sbjct 11844 GTGGTGCTTTCATCGATCAATCTCAATCAATGAACATCCACATGAAGGACCCTACAATGG 11903
Query 113266 CCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATT 113325
|||| || |||| ||||| | | ||||| |||||||| || || ||||| |
Sbjct 11904 GCAAGATCACTTCCATGCATTTTGCTGGATGGAAATTAGGTCTCAAGACTGGAATGTACT 11963
Query 113326 ACCTCCGATCTAAGGCAAAGGCGCGC-CCAATTCAGTTCAGTCTTGAACCAGAA 113378
| ||||| ||| ||| | ||| |||||||| |||| |||| | ||||
Sbjct 11964 ATCTCCGTACTATGGCTGCTTC-CGCACCAATTCAATTCACCGTTGATCAAGAA 12016
>seq4745
Length=15183
Score = 163 bits (180), Expect = 4e-35
Identities = 357/525 (68%), Gaps = 26/525 (5%)
Strand=Plus/Minus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGA---TACAAAG 102164
|||||||| || ||| | ||||| || || |||||| | | ||| |||| || ||
Sbjct 9208 ACAGTTCCTTGCATTAAGAAGAAGGCCGACTGGGCTGTTAGATGGATTGAGGATAAGAAC 9149
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| | |||||||| | || ||| ||||||| || ||||| |||||||||||| |
Sbjct 9148 TC---TACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCAGT 9092
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
||||||||| | |||||| |||||||||||||| || | ||| | |||||| |||
Sbjct 9091 GGTTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCTTT 9032
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTC 102344
||||||||||| ||||| ||||||||||| || || || || || || || ||
Sbjct 9031 TCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGC-CTG--CCTGCTC 8975
Query 102345 AAATTATTGCGTATTAAACCAACGACTGAG---ACTA----TTCATTCTATTGTTAAGGA 102397
|| | || || || || || | || || | |||| | || ||| ||
Sbjct 8974 ---TTCTCGC-ACTTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGA 8919
Query 102398 AGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTAT 102457
|| || |||||||| | | |||| | ||| || |||||||| |||||| | || ||
Sbjct 8918 GGCTGTCCAGATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCAT 8859
Query 102458 GAATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGA 102516
||| || || |||| |||| ||||||| || | || | || ||| ||
Sbjct 8858 GAACTCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGC--- 8802
Query 102517 TCGGGGTGCCTCCAA--TTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAG 102574
|| ||| || ||| || |||||||| ||||||||||| ||||||
Sbjct 8801 TCTTGGTAATGAGAAGGTTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTC 8742
Query 102575 CCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 102619
|||| || ||||| ||||||||||| ||| | ||||| |||||
Sbjct 8741 TCTCGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTA 8697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620685408088400
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