Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4887 176 5e-39 seq1181 86.0 7e-12 seq1083 86.0 7e-12 >seq4887 Length=16554 Score = 176 bits (194), Expect = 5e-39 Identities = 1150/1825 (63%), Gaps = 65/1825 (4%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||| ||||| || || |||||||| |||||| | | |||||| |||| | Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | ||| || || ||| | |||||| || ||||| ||||||||||| Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851 Query 109528 CGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 |||||| || || ||||| | | ||| | | ||| |||||||| |||||| Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAACAATGTTTCG---TTGAGAGATTTCCCAAACAGTC 11794 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||| | | ||||| ||| | || |||| |||||||||||||| ||||| | Sbjct 11793 TTGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCA 11734 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACA 109704 | ||| | | |||||| | | ||||| || || | | | ||| | | | Sbjct 11733 GCGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGA 11674 Query 109705 AG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 || ||| |||||| || || || || || || || ||| |||||||| | Sbjct 11673 AGCCATGG--GTTGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGG 11616 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 ||||| || |||||||| || ||| || || ||||| | || || || |||| Sbjct 11615 AAGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCA 11556 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG- 109881 | ||||| | || | |||||| || | ||| | ||| | | || ||| | Sbjct 11555 TAGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATT---GC-TTGAGG 11500 Query 109882 ---TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938 |||||||| | || | || ||| |||| ||||||||| ||||||| Sbjct 11499 CTATCCCAATCCCAGAGATCTGTAGG---AGTAACACC---CCACATATCATATTGAAGT 11446 Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 |||||| | | | |||||||| | | | |||| || | ||| ||| ||| | | Sbjct 11445 TCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATATGGGCCCAACTCCTTGGCAATC 11386 Query 109999 T---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055 | | || |||| || || || | || || || ||||| ||||| || || | Sbjct 11385 TGAACAGACGAAG--TCAAG-GCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGA 11329 Query 110056 AGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCC 110115 | | ||| | ||||| || | || | | || |||| || |||||| Sbjct 11328 TGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCC 11269 Query 110116 TGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACG 110172 |||||||| | | |||| || || || | |||| || ||| |||| || Sbjct 11268 TGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGC---TTCTGGGACA 11212 Query 110173 GGGTAAAAGTTGCGGTCGATGACCCGATTGA-GATTCTTCGTCACAGTCTTCGT-GATTT 110230 || || ||||| ||| || | | || | | |||| | || ||| || | Sbjct 11211 GGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCT--GACAACAACTTGAACGACCT 11154 Query 110231 CATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAA 110290 |||| || || | | |||| | ||| | || | |||||| | | |||||||||| Sbjct 11153 CATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGACAAAGGTTGGGAGAGCAA 11094 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350 |||| || | || || || | ||| || | | |||||| | ||||| || | Sbjct 11093 TAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGC 11034 Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410 |||||||||| || || || | |||||| || || || |||||| |||| Sbjct 11033 ACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCAT 10974 Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470 | || || |||||| | ||| | ||||| || ||||| | || || |||| | ||| | Sbjct 10973 CTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAA 10914 Query 110471 CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTA--CTTGGTGTAC 110526 | || || || | || | | ||||| |||||| ||| | | Sbjct 10913 GCTTTTGAGCCTTGATGGTCTTACG--ACCTTTACCTTGTCTCTCGTAACCTTCATAGAG 10856 Query 110527 AAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAA 110585 | |||| ||||| | || || ||||||| | | ||| | || || || || | Sbjct 10855 AG--CCTCGAATTCATCACCATAGACATCAGCCA-AGCCTGGACATTCGTTAGGGCACAT 10799 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 ||| | ||| | ||| || ||||| | ||||||||| || || |||||||| | || Sbjct 10798 GAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGC 10739 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 |||| || || || | | | || || | || ||||| || || ||||| || Sbjct 10738 ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAA 10679 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG--- 110762 || | || ||||| ||||||||||| || || || || | | || | | || Sbjct 10678 CTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTT 10622 Query 110763 ---ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAAT 110819 ||| | |||| ||||| | || ||| ||||| || | |||||||||| || Sbjct 10621 GTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGAT 10562 Query 110820 TCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879 || | || | ||| ||||| || ||| || | | ||||| || |||||| Sbjct 10561 ACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGAT 10502 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCAT 110938 | | |||||||||||| || ||| ||| ||||| ||| | | ||| ||| Sbjct 10501 GTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCT-TCAAAGTATCAT 10443 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | ||||||||||| ||| |||| | |||| || ||||| || || | ||||| Sbjct 10442 AGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCT 10383 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACAT 111056 | || || |||||| ||||||||| || | || || || | || ||| |||||| Sbjct 10382 GTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTG--TGTAAAGTATTTGTTGGACAT 10325 Query 111057 CTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCG 111116 | ||||||||| |||| || | ||| | |||||||||||||| |||||| || Sbjct 10324 CAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACG 10265 Query 111117 CATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTT 111176 ||||| ||| | ||| || ||| | ||||| || | ||| | ||||| Sbjct 10264 CATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGACGGAGGAGGTATGATCG 10205 Query 111177 CTCTAGGGTCTTGAGACCAAAGTAT 111201 ||| || ||||||| || |||||| Sbjct 10204 CTCAAGAGTCTTGAATCCGAAGTAT 10180 >seq1181 Length=10205 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 4320 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 4261 Query 136777 GGGAACA 136783 | || || Sbjct 4260 GTGATCA 4254 >seq1083 Length=7348 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 4479 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 4420 Query 136777 GGGAACA 136783 | || || Sbjct 4419 GTGACCA 4413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588921924641000