Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 176 5e-39
seq1181 86.0 7e-12
seq1083 86.0 7e-12
>seq4887
Length=16554
Score = 176 bits (194), Expect = 5e-39
Identities = 1150/1825 (63%), Gaps = 65/1825 (4%)
Strand=Plus/Minus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467
|| ||||| ||||| || || |||||||| |||||| | | |||||| |||| |
Sbjct 11970 CGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGCATGGAAGTG 11911
Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527
| ||| | ||| || || ||| | |||||| || ||||| |||||||||||
Sbjct 11910 ATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGATCGATGAAA 11851
Query 109528 CGACCACGATCAGCCGCCATGT---CGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584
|||||| || || ||||| | | ||| | | ||| |||||||| ||||||
Sbjct 11850 GCACCACGGTCTGCGGCCATCTGAACAATGTTTCG---TTGAGAGATTTCCCAAACAGTC 11794
Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644
||||| | | ||||| ||| | || |||| |||||||||||||| ||||| |
Sbjct 11793 TTGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGATCCACCGTCA 11734
Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACA 109704
| ||| | | |||||| | | ||||| || || | | | ||| | | |
Sbjct 11733 GCGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAATCCTTGAGA 11674
Query 109705 AG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762
|| ||| |||||| || || || || || || || ||| |||||||| |
Sbjct 11673 AGCCATGG--GTTGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAATAGATGTTGG 11616
Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822
||||| || |||||||| || ||| || || ||||| | || || || ||||
Sbjct 11615 AAGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGGCAGTTGGCA 11556
Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCG- 109881
| ||||| | || | |||||| || | ||| | ||| | | || ||| |
Sbjct 11555 TAGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATT---GC-TTGAGG 11500
Query 109882 ---TCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938
|||||||| | || | || ||| |||| ||||||||| |||||||
Sbjct 11499 CTATCCCAATCCCAGAGATCTGTAGG---AGTAACACC---CCACATATCATATTGAAGT 11446
Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998
|||||| | | | |||||||| | | | |||| || | ||| ||| ||| | |
Sbjct 11445 TCACCCTTGGAAACTGGAGAACCTTCGTAGGTCTCATATGGGCCCAACTCCTTGGCAATC 11386
Query 109999 T---CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATG 110055
| | || |||| || || || | || || || ||||| ||||| || || |
Sbjct 11385 TGAACAGACGAAG--TCAAG-GCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAGA 11329
Query 110056 AGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCC 110115
| | ||| | ||||| || | || | | || |||| || ||||||
Sbjct 11328 TGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACCC 11269
Query 110116 TGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCT---ACG 110172
|||||||| | | |||| || || || | |||| || ||| |||| ||
Sbjct 11268 TGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGC---TTCTGGGACA 11212
Query 110173 GGGTAAAAGTTGCGGTCGATGACCCGATTGA-GATTCTTCGTCACAGTCTTCGT-GATTT 110230
|| || ||||| ||| || | | || | | |||| | || ||| || |
Sbjct 11211 GGATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCT--GACAACAACTTGAACGACCT 11154
Query 110231 CATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAA 110290
|||| || || | | |||| | ||| | || | |||||| | | ||||||||||
Sbjct 11153 CATGAAGCTTTTGGAAATCATAAGTTCCCTCAGCCATGTTGACAAAGGTTGGGAGAGCAA 11094
Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTAC 110350
|||| || | || || || | ||| || | | |||||| | ||||| || |
Sbjct 11093 TAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGC 11034
Query 110351 ACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCAT 110410
|||||||||| || || || | |||||| || || || |||||| ||||
Sbjct 11033 ACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCAT 10974
Query 110411 CCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA 110470
| || || |||||| | ||| | ||||| || ||||| | || || |||| | ||| |
Sbjct 10973 CTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAA 10914
Query 110471 CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTA--CTTGGTGTAC 110526
| || || || | || | | ||||| |||||| ||| | |
Sbjct 10913 GCTTTTGAGCCTTGATGGTCTTACG--ACCTTTACCTTGTCTCTCGTAACCTTCATAGAG 10856
Query 110527 AAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAA 110585
| |||| ||||| | || || ||||||| | | ||| | || || || || |
Sbjct 10855 AG--CCTCGAATTCATCACCATAGACATCAGCCA-AGCCTGGACATTCGTTAGGGCACAT 10799
Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645
||| | ||| | ||| || ||||| | ||||||||| || || |||||||| | ||
Sbjct 10798 GAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGC 10739
Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705
|||| || || || | | | || || | || ||||| || || ||||| ||
Sbjct 10738 ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAA 10679
Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACG--- 110762
|| | || ||||| ||||||||||| || || || || | | || | | ||
Sbjct 10678 CTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACC---AGGGCGCTT 10622
Query 110763 ---ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAAT 110819
||| | |||| ||||| | || ||| ||||| || | |||||||||| ||
Sbjct 10621 GTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGAT 10562
Query 110820 TCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879
|| | || | ||| ||||| || ||| || | | ||||| || ||||||
Sbjct 10561 ACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGAT 10502
Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGTGTACCAT 110938
| | |||||||||||| || ||| ||| ||||| ||| | | ||| |||
Sbjct 10501 GTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCT-TCAAAGTATCAT 10443
Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998
| ||||||||||| ||| |||| | |||| || ||||| || || | |||||
Sbjct 10442 AGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCT 10383
Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACAT 111056
| || || |||||| ||||||||| || | || || || | || ||| ||||||
Sbjct 10382 GTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTG--TGTAAAGTATTTGTTGGACAT 10325
Query 111057 CTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCG 111116
| ||||||||| |||| || | ||| | |||||||||||||| |||||| ||
Sbjct 10324 CAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACG 10265
Query 111117 CATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTT 111176
||||| ||| | ||| || ||| | ||||| || | ||| | |||||
Sbjct 10264 CATGATCATTTGTTGTGGACGTTCAGCAACATTTCCGTCGAGACGGAGGAGGTATGATCG 10205
Query 111177 CTCTAGGGTCTTGAGACCAAAGTAT 111201
||| || ||||||| || ||||||
Sbjct 10204 CTCAAGAGTCTTGAATCCGAAGTAT 10180
>seq1181
Length=10205
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 4320 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 4261
Query 136777 GGGAACA 136783
| || ||
Sbjct 4260 GTGATCA 4254
>seq1083
Length=7348
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 4479 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 4420
Query 136777 GGGAACA 136783
| || ||
Sbjct 4419 GTGACCA 4413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588921924641000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |