Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 295 8e-75
seq4745 104 3e-17
>seq4887
Length=16554
Score = 295 bits (326), Expect = 8e-75
Identities = 1134/1755 (65%), Gaps = 47/1755 (3%)
Strand=Plus/Minus
Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640
||| ||| |||||||||||||| || |||||||| ||| |||||| | | ||||
Sbjct 11979 GCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGC 11920
Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700
|| |||| || |||| ||| || || | |||| | ||||| |||| ||
Sbjct 11919 ATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGA 11860
Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCAT---ATCAATGACATCCTTCATCTTGATTTCC 105757
|| ||||| |||||| | ||| ||||| | ||||| || || | |||||||
Sbjct 11859 TCGATGAAAGCACCACGGTCTGCGGCCATCTGAACAATG-TTTCGTTGA--GAGATTTCC 11803
Query 105758 CACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAA 105817
|| || || ||||||| ||||| ||| ||||||| | | || |||||||| ||
Sbjct 11802 CAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGAT 11743
Query 105818 CCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGA 105877
|| || | || ||| | | |||||| | | |||||||| || || | | |
Sbjct 11742 CCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAA 11683
Query 105878 TCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGAT 105935
|| |||| || ||| |||||||| |||||||| || || | | ||
Sbjct 11682 TCCTTGAGAAGCCATG--GGTTGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAAT 11625
Query 105936 AGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGG 105995
||||||| | ||||| || || || ||||| || ||| | ||||| | || ||
Sbjct 11624 AGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGG 11565
Query 105996 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCT 106055
| |||||||| || || | | | |||||| |||| ||| | || |||||| || ||
Sbjct 11564 CAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCT 11505
Query 106056 TGAGAACATCCCAGTCGTAGTTGAGCT-TGGTTTCACCTTCCCACATATCAAATTGAAGC 106114
|||| |||||| || || || || | | | | ||||||||||| |||||||
Sbjct 11504 TGAGGCTATCCCAATCCCAG-AGATCTGTAGGAGTAACACCCCACATATCATATTGAAGT 11446
Query 106115 AC-CCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATA-GGAACCTTGGGCTTCAGCCA 106172
| ||||||| | | |||||||| || | |||||||| || || ||| | ||
Sbjct 11445 TCACCCTTGGAAACT-GGAGAACCTTCGTAGGTCTCATATGGGCCCAACTCCTT--GGCA 11389
Query 106173 A--TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230
| | |||| || || || |||| || ||||| || || || | || |
Sbjct 11388 ATCTGAACAG-ACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAG 11330
Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290
| ||||| ||| |||||| |||| | ||| | || |||| || |||||
Sbjct 11329 ATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACC 11270
Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGG 106349
|||||||| | | ||||||||| ||| || | ||| ||||| || ||| || |
Sbjct 11269 CTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGC-TTCTGGGACAG 11211
Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409
|||| | || ||||||| | ||| | ||| || ||||| | || ||||
Sbjct 11210 GATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCAT 11151
Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTC---ATTGACATACTTTGGAAGGGCGA 106466
|||| |||| ||||| |||| | ||| | |||||| | |||| || || |
Sbjct 11150 GAAGCTTTTGGAAATCATAAGTTC---CCTCAGCCATGTTGACAAAGGTTGGGAGAGCAA 11094
Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526
| || ||||| || || ||| ||||||| | | ||| || | |||||||| |
Sbjct 11093 TAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGC 11034
Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586
|||||||||| || || || || | |||||||||||||||||||||||||| ||||
Sbjct 11033 ACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCAT 10974
Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646
| ||||| |||||| | || | || ||||| ||||| | || || || | | ||| |
Sbjct 10973 CTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAA 10914
Query 106647 -CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGC-CTCGTACTTTGTGTAG 106702
| | | | || | |||| || | || | ||| | |||||| | |||
Sbjct 10913 GCTTTTGAGCCTTG----ATGGTCTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAG 10858
Query 106703 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 106762
|| || || || || ||||| | || | | ||||| | || || || |
Sbjct 10857 AGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACATTCGTTAGGGCACATG 10798
Query 106763 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 106822
|| | ||| | || || ||||| ||||||||||| || ||||||||||| ||||
Sbjct 10797 AGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCA 10738
Query 106823 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882
| |||||||| | | | | || || | || ||||| ||| | || | ||||
Sbjct 10737 TAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAAC 10678
Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGAC------TGCGATAGATCCCTTTCGA 106936
|| | || |||||| |||||||| ||||| || || ||| || | ||| |
Sbjct 10677 TCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTA 10618
Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996
||| |||| | ||||| | || ||| ||| || || |||||||| |||| |||
Sbjct 10617 ---CCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATA 10561
Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 107056
|| | || | ||| ||||| || ||| | | | || | | ||||||
Sbjct 10560 CCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATG 10501
Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 107116
| | |||||||| ||||| |||||| || ||||| | | | ||| |||||
Sbjct 10500 TTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAG 10441
Query 107117 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 107176
||||| | || |||||||| | | ||||||||||| || | ||| | |
Sbjct 10440 ATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTGT 10381
Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTT 107235
|| ||||| ||| |||||| ||||| | ||||| | || || | | |||||||
Sbjct 10380 GGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATCAA 10322
Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295
|| |||||| || | | || ||||| || || ||||| || || | ||| ||||||||
Sbjct 10321 GTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCAT 10262
Query 107296 AAACATGTATTGGGG 107310
| ||| | ||| ||
Sbjct 10261 GATCATTTGTTGTGG 10247
>seq4745
Length=15183
Score = 104 bits (114), Expect = 3e-17
Identities = 336/516 (65%), Gaps = 8/516 (2%)
Strand=Plus/Plus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| |||||||||||||| |||||||||||||| || | || ||||||||||||
Sbjct 8697 TAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGCGAGAGAAATGTTTTCCATG 8756
Query 117046 AAGTCAAATGGATT--CTTCGCGTTCCAAATGGGTGGCA-CCCCAACTTGTTTGAGGAGA 117102
||||| |||||||| || || | || | || |||| || |||
Sbjct 8757 AAGTCGAATGGATTGGCTGATCGGT---AAACCTTCTCATTACCAAGAGCAACAAGAAGA 8813
Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTA 117162
|| || | || |||||||||| | |||| || |||||||| || | |||| |
Sbjct 8814 CGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTTCATGCCAAGGAGAGCA 8873
Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 117222
||||| || || ||| | ||| ||| |||||||| || |||||| | | | |
Sbjct 8874 CATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGCCTCTGTAATAACATCC 8933
Query 117223 TGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCC 117282
|| | | || | | || | || ||| | ||||||| ||| || ||
Sbjct 8934 TGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAGAGCAGGCAGGCGAAGTCG 8993
Query 117283 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGA 117342
|| |||||||| || ||||| || || || || || ||| || || | ||| |
Sbjct 8994 GTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATCAAG 9053
Query 117343 CCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 117402
|| |||||||| | ||| |||||| | ||| || || |||||||||||| || ||
Sbjct 9054 CCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCAACG 9113
Query 117403 CACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTTGTGTCAAACCATTTCAT 117461
|| || || | || || | || |||| || | ||| |||| |||| | |
Sbjct 9114 GCAGCGAATGCGACGAGACGTTGAGCAAAGGTAGAG-TTCTTATCCTCAATCCATCTAAC 9172
Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497
||||| | |||||||||| ||| || || || ||
Sbjct 9173 AGCCCAGTCGGCCTTCTTCTTAATGCAAGGAACTGT 9208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589926632387800
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