Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4887 295 8e-75 seq4745 104 3e-17 >seq4887 Length=16554 Score = 295 bits (326), Expect = 8e-75 Identities = 1134/1755 (65%), Gaps = 47/1755 (3%) Strand=Plus/Minus Query 105581 GCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGC 105640 ||| ||| |||||||||||||| || |||||||| ||| |||||| | | |||| Sbjct 11979 GCCATAGTACGGAGATAGTACATTCCAGTCTTGAGACCTAATTTCCATCCAGCAAAATGC 11920 Query 105641 ATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGG 105700 || |||| || |||| ||| || || | |||| | ||||| |||| || Sbjct 11919 ATGGAAGTGATCTTGCCCATTGTAGGGTCCTTCATGTGGATGTTCATTGATTGAGATTGA 11860 Query 105701 TCAATGAAGCGACCACGTTGTGCCGCCAT---ATCAATGACATCCTTCATCTTGATTTCC 105757 || ||||| |||||| | ||| ||||| | ||||| || || | ||||||| Sbjct 11859 TCGATGAAAGCACCACGGTCTGCGGCCATCTGAACAATG-TTTCGTTGA--GAGATTTCC 11803 Query 105758 CACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAA 105817 || || || ||||||| ||||| ||| ||||||| | | || |||||||| || Sbjct 11802 CAAACAGTCTTGTAGAGAGCCTTGAGTTCAGCTGGGATGTTGGGAATGTTTTGAATAGAT 11743 Query 105818 CCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGA 105877 || || | || ||| | | |||||| | | |||||||| || || | | | Sbjct 11742 CCACCGTCAGCGATGATGCGGTTCTTCATGTTGTCAGACCAAAGTCCCATGTCGACCAAA 11683 Query 105878 TCATTGACGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGAT 105935 || |||| || ||| |||||||| |||||||| || || | | || Sbjct 11682 TCCTTGAGAAGCCATG--GGTTGACAACTTGGAACTCTCCGGCCAGCACACGACGGGAAT 11625 Query 105936 AGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGG 105995 ||||||| | ||||| || || || ||||| || ||| | ||||| | || || Sbjct 11624 AGATGTTGGAAGTGTATGGCTCGAAACATTCGTTGAAACCGAGAATTTGAGATGTACTGG 11565 Query 105996 CTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCT 106055 | |||||||| || || | | | |||||| |||| ||| | || |||||| || || Sbjct 11564 CAGTTGGCATAGGAGCAACAAGCAAACTGTTGCGAATACCATGTTGCTTGATAGATTGCT 11505 Query 106056 TGAGAACATCCCAGTCGTAGTTGAGCT-TGGTTTCACCTTCCCACATATCAAATTGAAGC 106114 |||| |||||| || || || || | | | | ||||||||||| ||||||| Sbjct 11504 TGAGGCTATCCCAATCCCAG-AGATCTGTAGGAGTAACACCCCACATATCATATTGAAGT 11446 Query 106115 AC-CCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATA-GGAACCTTGGGCTTCAGCCA 106172 | ||||||| | | |||||||| || | |||||||| || || ||| | || Sbjct 11445 TCACCCTTGGAAACT-GGAGAACCTTCGTAGGTCTCATATGGGCCCAACTCCTT--GGCA 11389 Query 106173 A--TTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 | | |||| || || || |||| || ||||| || || || | || | Sbjct 11388 ATCTGAACAG-ACGAAGTCAAGGCACCGTGGTAGATGGTCTCGAAAATCTGGATGTTAAG 11330 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290 | ||||| ||| |||||| |||| | ||| | || |||| || ||||| Sbjct 11329 ATGTTTGGCCTCAGGTGAATCGAATGGCAAACGGAGAGCCAGGAAGGCATCAGCAAGACC 11270 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGG 106349 |||||||| | | ||||||||| ||| || | ||| ||||| || ||| || | Sbjct 11269 CTGAACACCAACAGCAATAGGTCGGTGACGGAAGTTACTCTTTCTAGC-TTCTGGGACAG 11211 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409 |||| | || ||||||| | ||| | ||| || ||||| | || |||| Sbjct 11210 GATAGTAGTTGATGTCAATAATCTTGTTCAAGTTTCTGACAACAACTTGAACGACCTCAT 11151 Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTC---ATTGACATACTTTGGAAGGGCGA 106466 |||| |||| ||||| |||| | ||| | |||||| | |||| || || | Sbjct 11150 GAAGCTTTTGGAAATCATAAGTTC---CCTCAGCCATGTTGACAAAGGTTGGGAGAGCAA 11094 Query 106467 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 106526 | || ||||| || || ||| ||||||| | | ||| || | |||||||| | Sbjct 11093 TAGAAGCCAAGTTACAGCAAGCAACCTCATCCGGTGCAGAGTATTCGACGATTTCTGTGC 11034 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCAT 106586 |||||||||| || || || || | |||||||||||||||||||||||||| |||| Sbjct 11033 ACAAGTTGGAGCTACGGATTGTGCCGAGGTTCTTTTGGTTACTCTTTTTGTTGCAAGCAT 10974 Query 106587 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 | ||||| |||||| | || | || ||||| ||||| | || || || | | ||| | Sbjct 10973 CTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGGATGGAATACCAAA 10914 Query 106647 -CATCGGCGGCTGGTACAATGGCGTT--GGCCCGTCCCTCCGC-CTCGTACTTTGTGTAG 106702 | | | | || | |||| || | || | ||| | |||||| | ||| Sbjct 10913 GCTTTTGAGCCTTG----ATGGTCTTACGACCTTTACCTTGTCTCTCGTAACCTTCATAG 10858 Query 106703 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 106762 || || || || || ||||| | || | | ||||| | || || || | Sbjct 10857 AGAGCCTCGAATTCATCACCATAGACATCAGCCAAGCCTGGACATTCGTTAGGGCACATG 10798 Query 106763 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGAT 106822 || | ||| | || || ||||| ||||||||||| || ||||||||||| |||| Sbjct 10797 AGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCA 10738 Query 106823 GAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAAC 106882 | |||||||| | | | | || || | || ||||| ||| | || | |||| Sbjct 10737 TAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAAC 10678 Query 106883 TCCATGATATCCGCGTGCCATGGCTCAAGATAGAC------TGCGATAGATCCCTTTCGA 106936 || | || |||||| |||||||| ||||| || || ||| || | ||| | Sbjct 10677 TCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTA 10618 Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 ||| |||| | ||||| | || ||| ||| || || |||||||| |||| ||| Sbjct 10617 ---CCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATA 10561 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATG 107056 || | || | ||| ||||| || ||| | | | || | | |||||| Sbjct 10560 CCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCACGGATTCTGTGGATG 10501 Query 107057 TGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAG 107116 | | |||||||| ||||| |||||| || ||||| | | | ||| ||||| Sbjct 10500 TTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATCTTCAAAGTATCATAG 10441 Query 107117 ATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTT 107176 ||||| | || |||||||| | | ||||||||||| || | ||| | | Sbjct 10440 ATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGATGAAAGCTGAGCCTGT 10381 Query 107177 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTT 107235 || ||||| ||| |||||| ||||| | ||||| | || || | | ||||||| Sbjct 10380 GGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGT-AAAGTATTTGTTGGACATCAA 10322 Query 107236 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCAT 107295 || |||||| || | | || ||||| || || ||||| || || | ||| |||||||| Sbjct 10321 GTTGTATGTTTCGATGGCACTTTCAATATCATCACCGTGAATACCAACGGCAACACGCAT 10262 Query 107296 AAACATGTATTGGGG 107310 | ||| | ||| || Sbjct 10261 GATCATTTGTTGTGG 10247 >seq4745 Length=15183 Score = 104 bits (114), Expect = 3e-17 Identities = 336/516 (65%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||||||||||||| |||||||||||||| || | || |||||||||||| Sbjct 8697 TAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGCGAGAGAAATGTTTTCCATG 8756 Query 117046 AAGTCAAATGGATT--CTTCGCGTTCCAAATGGGTGGCA-CCCCAACTTGTTTGAGGAGA 117102 ||||| |||||||| || || | || | || |||| || ||| Sbjct 8757 AAGTCGAATGGATTGGCTGATCGGT---AAACCTTCTCATTACCAAGAGCAACAAGAAGA 8813 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTA 117162 || || | || |||||||||| | |||| || |||||||| || | |||| | Sbjct 8814 CGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTTCATGCCAAGGAGAGCA 8873 Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 117222 ||||| || || ||| | ||| ||| |||||||| || |||||| | | | | Sbjct 8874 CATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGCCTCTGTAATAACATCC 8933 Query 117223 TGGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCC 117282 || | | || | | || | || ||| | ||||||| ||| || || Sbjct 8934 TGAACGGCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGAAGAGCAGGCAGGCGAAGTCG 8993 Query 117283 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGA 117342 || |||||||| || ||||| || || || || || ||| || || | ||| | Sbjct 8994 GTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCCATCAAG 9053 Query 117343 CCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 117402 || |||||||| | ||| |||||| | ||| || || |||||||||||| || || Sbjct 9054 CCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCTTCAACG 9113 Query 117403 CACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTTGTGTCAAACCATTTCAT 117461 || || || | || || | || |||| || | ||| |||| |||| | | Sbjct 9114 GCAGCGAATGCGACGAGACGTTGAGCAAAGGTAGAG-TTCTTATCCTCAATCCATCTAAC 9172 Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGT 117497 ||||| | |||||||||| ||| || || || || Sbjct 9173 AGCCCAGTCGGCCTTCTTCTTAATGCAAGGAACTGT 9208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589926632387800