Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq4599 158 1e-33
>seq4599
Length=27231
Score = 158 bits (174), Expect = 1e-33
Identities = 191/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827
||| | |||||| | || | ||||| || ||||||||||||||||||||||| |
Sbjct 13216 CAACGTTTTGGTGTACCATTTGGATACGGGGGTCCTCATGCTGCATTCTTTGCGGTCAGC 13275
Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887
||||| ||||||||||||||||| || | || | ||| || || || ||||
Sbjct 13276 GACAACTATAAGAGAAAGATACCCGGGCGTATCATTGGTGTATCCAAGGACAGGTTAGGT 13335
Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947
|| || ||| ||||| || |||| || |||||||| || ||| | ||||| || |||
Sbjct 13336 AACAAGGCAATGAGATTGGCCTTACAAACAAGAGAGCAACACATCCGCAGAGAAAAGGCA 13395
Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007
|| || ||| | || ||||| |||||| | ||||| |||||| || ||||||||| |
Sbjct 13396 ACTAGCAACGTTTGTACAGCACAGGCATTACTGGCGAATATGAGTGCATTCTATGCCGTC 13455
Query 154008 TATCATGGTGCAGATGGACT 154027
|||||||| || | |||||
Sbjct 13456 TATCATGGACCACAAGGACT 13475
Score = 109 bits (120), Expect = 6e-19
Identities = 268/395 (68%), Gaps = 15/395 (4%)
Strand=Plus/Plus
Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778
|||||||| |||| |||||| || || || || |||||| |||| ||||||||| |||
Sbjct 14230 TGTTTGATTCCAGTGTCAGCTCACGGTACCAACCCTGCTTCAGCTGCCATGGCAGGAATG 14289
Query 154779 AAAGTTGTAGGTGTCAAGTGTGA--TGATGAT-GGTAACATAGACATCAAAGATCTAGAG 154835
|||||| || || ||||| | | | || ||| | || || | ||| || ||
Sbjct 14290 CGAGTTGTCACCGTGAAATGTGACATCAAGTCAGGGAACCTGGATATGACAGA-CTTGAA 14348
Query 154836 AAGAAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATACCCATCTA 154893
||| | |||||| ||||| | ||||||||| ||||| || ||
Sbjct 14349 GGCTAAGTGCG-AGAAATACAGCGAGGAACTCGGAGCTATTATGATCACATATCC---TA 14404
Query 154894 -CACAT--GGTGTATTTGAAACTAACATTAGA-CAGATATGTAAGATCGTTCATGACAAT 154949
||||| |||||||| ||| | | || | | | | | ||| | || ||||| | ||
Sbjct 14405 GCACATTCGGTGTATTCGAACCGGAAATCAAAGCCGCT-TGTGATATTGTTCACCAACAT 14463
Query 154950 GGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCA 155009
|| ||||| |||||| | || || || || | ||||| ||| | || || |||
Sbjct 14464 GGCGGTCAAGTATATATGGACGGTGCCAACATGAATGCTCAGATTGGCCTTTGCTCACCT 14523
Query 155010 TGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACAT 155069
||||| ||| || ||||| || ||||| || | || || || ||||||||||| |||
Sbjct 14524 GGTGAGATTGGCGCCGATGTCTGCCATCTTAATCTTCACAAGACCTTCTGTATTCCTCAT 14583
Query 155070 GGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104
|| || || || ||||| || ||||| || |||||
Sbjct 14584 GGCGGCGGTGGACCTGGTGTTGGTCCCATTGGTGT 14618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579159621024800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |