Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq4599 158 1e-33 >seq4599 Length=27231 Score = 158 bits (174), Expect = 1e-33 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||| | |||||| | || | ||||| || ||||||||||||||||||||||| | Sbjct 13216 CAACGTTTTGGTGTACCATTTGGATACGGGGGTCCTCATGCTGCATTCTTTGCGGTCAGC 13275 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 ||||| ||||||||||||||||| || | || | ||| || || || |||| Sbjct 13276 GACAACTATAAGAGAAAGATACCCGGGCGTATCATTGGTGTATCCAAGGACAGGTTAGGT 13335 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 || || ||| ||||| || |||| || |||||||| || ||| | ||||| || ||| Sbjct 13336 AACAAGGCAATGAGATTGGCCTTACAAACAAGAGAGCAACACATCCGCAGAGAAAAGGCA 13395 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007 || || ||| | || ||||| |||||| | ||||| |||||| || ||||||||| | Sbjct 13396 ACTAGCAACGTTTGTACAGCACAGGCATTACTGGCGAATATGAGTGCATTCTATGCCGTC 13455 Query 154008 TATCATGGTGCAGATGGACT 154027 |||||||| || | ||||| Sbjct 13456 TATCATGGACCACAAGGACT 13475 Score = 109 bits (120), Expect = 6e-19 Identities = 268/395 (68%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 154719 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATG 154778 |||||||| |||| |||||| || || || || |||||| |||| ||||||||| ||| Sbjct 14230 TGTTTGATTCCAGTGTCAGCTCACGGTACCAACCCTGCTTCAGCTGCCATGGCAGGAATG 14289 Query 154779 AAAGTTGTAGGTGTCAAGTGTGA--TGATGAT-GGTAACATAGACATCAAAGATCTAGAG 154835 |||||| || || ||||| | | | || ||| | || || | ||| || || Sbjct 14290 CGAGTTGTCACCGTGAAATGTGACATCAAGTCAGGGAACCTGGATATGACAGA-CTTGAA 14348 Query 154836 AAGAAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATACCCATCTA 154893 ||| | |||||| ||||| | ||||||||| ||||| || || Sbjct 14349 GGCTAAGTGCG-AGAAATACAGCGAGGAACTCGGAGCTATTATGATCACATATCC---TA 14404 Query 154894 -CACAT--GGTGTATTTGAAACTAACATTAGA-CAGATATGTAAGATCGTTCATGACAAT 154949 ||||| |||||||| ||| | | || | | | | | ||| | || ||||| | || Sbjct 14405 GCACATTCGGTGTATTCGAACCGGAAATCAAAGCCGCT-TGTGATATTGTTCACCAACAT 14463 Query 154950 GGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCA 155009 || ||||| |||||| | || || || || | ||||| ||| | || || ||| Sbjct 14464 GGCGGTCAAGTATATATGGACGGTGCCAACATGAATGCTCAGATTGGCCTTTGCTCACCT 14523 Query 155010 TGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACAT 155069 ||||| ||| || ||||| || ||||| || | || || || ||||||||||| ||| Sbjct 14524 GGTGAGATTGGCGCCGATGTCTGCCATCTTAATCTTCACAAGACCTTCTGTATTCCTCAT 14583 Query 155070 GGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 || || || || ||||| || ||||| || ||||| Sbjct 14584 GGCGGCGGTGGACCTGGTGTTGGTCCCATTGGTGT 14618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579159621024800