Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq4599 158 1e-33 >seq4599 Length=27231 Score = 158 bits (174), Expect = 1e-33 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||| | |||||| | || | |||||||| ||||||||||||||||||||||| | Sbjct 13216 CAACGTTTTGGTGTACCATTTGGATACGGGGGTCCTCATGCTGCATTCTTTGCGGTCAGC 13275 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 ||||| ||||||||||||||||| || | || | ||| || || || |||| Sbjct 13276 GACAACTATAAGAGAAAGATACCCGGGCGTATCATTGGTGTATCCAAGGACAGGTTAGGT 13335 Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 || || ||| ||||| || |||| || |||||||| || ||| | ||||| || ||| Sbjct 13336 AACAAGGCAATGAGATTGGCCTTACAAACAAGAGAGCAACACATCCGCAGAGAAAAGGCA 13395 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682 || || ||| | || |||||||| ||| | ||||| |||||| || |||||||| | Sbjct 13396 ACTAGCAACGTTTGTACAGCACAGGCATTACTGGCGAATATGAGTGCATTCTATGCCGTC 13455 Query 158683 TATCATGGTGCAGATGGACT 158702 |||||||| || | ||||| Sbjct 13456 TATCATGGACCACAAGGACT 13475 Score = 131 bits (144), Expect = 2e-25 Identities = 273/395 (69%), Gaps = 15/395 (4%) Strand=Plus/Plus Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453 |||||||| |||| |||||| || || || || ||||| ||||| | |||||||| ||| Sbjct 14230 TGTTTGATTCCAGTGTCAGCTCACGGTACCAACCCTGCTTCAGCTGCCATGGCAGGAATG 14289 Query 159454 AAAGTTGTAGGTGTCAAGTGTGA--TGATGAT-GGCAACATAGACATCAAAGATCTAGAG 159510 |||||| || || ||||| | | | || ||| | || || | ||| || || Sbjct 14290 CGAGTTGTCACCGTGAAATGTGACATCAAGTCAGGGAACCTGGATATGACAGA-CTTGAA 14348 Query 159511 AAGAAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATATCCATCTA 159568 ||| | |||||| ||||| | ||||||||| |||||||| || Sbjct 14349 GGCTAAGTGCG-AGAAATACAGCGAGGAACTCGGAGCTATTATGATCACATATCC---TA 14404 Query 159569 -CACAT--GGTGTATTTGAAACAAACATCAGA-CAGATATGTAAGATTGTTCATGAGAAT 159624 ||||| |||||||| ||| | | |||| | | | | ||| | |||||||| | || Sbjct 14405 GCACATTCGGTGTATTCGAACCGGAAATCAAAGCCGCT-TGTGATATTGTTCACCAACAT 14463 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCA 159684 || ||||| |||||| | || ||||| || | ||||| ||| | || || ||| Sbjct 14464 GGCGGTCAAGTATATATGGACGGTGCCAACATGAATGCTCAGATTGGCCTTTGCTCACCT 14523 Query 159685 TGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACAT 159744 |||| ||| || ||||| || ||||| || | || ||||| ||||||||||| ||| Sbjct 14524 GGTGAGATTGGCGCCGATGTCTGCCATCTTAATCTTCACAAGACCTTCTGTATTCCTCAT 14583 Query 159745 GGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || || || || ||||| || ||||| |||||||| Sbjct 14584 GGCGGCGGTGGACCTGGTGTTGGTCCCATTGGTGT 14618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587997209549200