Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq4599 158 1e-33
>seq4599
Length=27231
Score = 158 bits (174), Expect = 1e-33
Identities = 191/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Plus
Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502
||| | |||||| | || | |||||||| ||||||||||||||||||||||| |
Sbjct 13216 CAACGTTTTGGTGTACCATTTGGATACGGGGGTCCTCATGCTGCATTCTTTGCGGTCAGC 13275
Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562
||||| ||||||||||||||||| || | || | ||| || || || ||||
Sbjct 13276 GACAACTATAAGAGAAAGATACCCGGGCGTATCATTGGTGTATCCAAGGACAGGTTAGGT 13335
Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622
|| || ||| ||||| || |||| || |||||||| || ||| | ||||| || |||
Sbjct 13336 AACAAGGCAATGAGATTGGCCTTACAAACAAGAGAGCAACACATCCGCAGAGAAAAGGCA 13395
Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682
|| || ||| | || |||||||| ||| | ||||| |||||| || |||||||| |
Sbjct 13396 ACTAGCAACGTTTGTACAGCACAGGCATTACTGGCGAATATGAGTGCATTCTATGCCGTC 13455
Query 158683 TATCATGGTGCAGATGGACT 158702
|||||||| || | |||||
Sbjct 13456 TATCATGGACCACAAGGACT 13475
Score = 131 bits (144), Expect = 2e-25
Identities = 273/395 (69%), Gaps = 15/395 (4%)
Strand=Plus/Plus
Query 159394 TGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATG 159453
|||||||| |||| |||||| || || || || ||||| ||||| | |||||||| |||
Sbjct 14230 TGTTTGATTCCAGTGTCAGCTCACGGTACCAACCCTGCTTCAGCTGCCATGGCAGGAATG 14289
Query 159454 AAAGTTGTAGGTGTCAAGTGTGA--TGATGAT-GGCAACATAGACATCAAAGATCTAGAG 159510
|||||| || || ||||| | | | || ||| | || || | ||| || ||
Sbjct 14290 CGAGTTGTCACCGTGAAATGTGACATCAAGTCAGGGAACCTGGATATGACAGA-CTTGAA 14348
Query 159511 AAGAAAGCAATCATGAATACATTT--GAACTGTCATGTATTATGATTACATATCCATCTA 159568
||| | |||||| ||||| | ||||||||| |||||||| ||
Sbjct 14349 GGCTAAGTGCG-AGAAATACAGCGAGGAACTCGGAGCTATTATGATCACATATCC---TA 14404
Query 159569 -CACAT--GGTGTATTTGAAACAAACATCAGA-CAGATATGTAAGATTGTTCATGAGAAT 159624
||||| |||||||| ||| | | |||| | | | | ||| | |||||||| | ||
Sbjct 14405 GCACATTCGGTGTATTCGAACCGGAAATCAAAGCCGCT-TGTGATATTGTTCACCAACAT 14463
Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCA 159684
|| ||||| |||||| | || ||||| || | ||||| ||| | || || |||
Sbjct 14464 GGCGGTCAAGTATATATGGACGGTGCCAACATGAATGCTCAGATTGGCCTTTGCTCACCT 14523
Query 159685 TGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACAT 159744
|||| ||| || ||||| || ||||| || | || ||||| ||||||||||| |||
Sbjct 14524 GGTGAGATTGGCGCCGATGTCTGCCATCTTAATCTTCACAAGACCTTCTGTATTCCTCAT 14583
Query 159745 GGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779
|| || || || ||||| || ||||| ||||||||
Sbjct 14584 GGCGGCGGTGGACCTGGTGTTGGTCCCATTGGTGT 14618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587997209549200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |