Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq894 163 6e-35
seq5771 120 7e-22
seq5062 120 7e-22
>seq894
Length=6424
Score = 163 bits (180), Expect = 6e-35
Identities = 152/193 (79%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008
||| |||||||| |||||||| | ||||||||| ||||| || | ||||| || |||||
Sbjct 3246 CTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAA 3305
Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068
|| | |||||||||||| || || ||||| || |||||||| || ||| |||||||||
Sbjct 3306 AATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTT 3365
Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128
|||||||| || || |||||| || | |||| |||||||| |||||||| || ||
Sbjct 3366 ATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAAC 3425
Query 195129 GAACACTTGCATT 195141
|| | |||||||
Sbjct 3426 AAAGATTTGCATT 3438
Score = 127 bits (140), Expect = 5e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
||| ||||| |||||||| ||||| || | || || | ||||| || | |||||||||
Sbjct 3468 AGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCCAACTGCTTACC 3527
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
|||||||| || |||||||| || || ||||||||||| ||||||||||| || |||
Sbjct 3528 AGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGAATCTTGCTCTT 3587
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
||||| || || || || || || || || | || | |||||||| || | |||
Sbjct 3588 TACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTTTCCGGTAAGAGT 3647
Query 195123 TTTTACGAACACTTGCAT 195140
|| ||||| | |||||
Sbjct 3648 CTTGACGAAAATCTGCAT 3665
>seq5771
Length=11851
Score = 120 bits (132), Expect = 7e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
||||| || || ||||| | | ||| | ||||| || || ||||| || ||||||||
Sbjct 7519 TTTTGGATGTTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATC 7578
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| |||||||| || || ||||| || || ||||||||||| || |||||| || ||
Sbjct 7579 AAACGTTGTTGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCG 7638
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|||||||| || ||| || |||||||| | ||||| || ||||| || || |||||
Sbjct 7639 ATGGTGTCGGAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 7697
>seq5062
Length=19932
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||||||||| ||||| || || || |||||||||| |||||| | ||||||||||| ||
Sbjct 11101 GTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTG 11160
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || |||||||| || || || || || || || || || || ||
Sbjct 11161 CTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTT 11220
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||| || || || ||||| || || || || ||||| | || || || ||
Sbjct 11221 GGTTTTGACATTATCGATAGTGTCGGAGGACTCGACCTCTAGGGTGATGGTTTTACCCGT 11280
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 11281 GAGGGTCTTGACGAAGATCTGCAT 11304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109377189113615
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |