Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq5062 104 2e-17
seq894 93.3 3e-14
>seq5062
Length=19932
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
||||| | || | || |||||||||| || || ||||| ||||| || || |||
Sbjct 11078 CCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 11137
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | || |||| || || || || ||||| || ||||| ||||| || || | ||
Sbjct 11138 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGG 11197
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930
| |||||||| || ||||| |||||| || ||||||| || || |||
Sbjct 11198 ATTCCCTCCTTATCCTGGATCTTGGTTTTGAC--AT--TATCGATAGTGTCGGAGGACTC 11253
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || | ||| |||||||| |||||||| ||||| || |||||||||||
Sbjct 11254 GACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304
>seq894
Length=6424
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || || |||||||| || |||||||| ||| |||| |||
Sbjct 3229 ACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCC 3288
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| || ||||| || || || | |||||| ||||| | || | |||||||||||
Sbjct 3289 AATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGG 3348
Query 34893 ATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||| ||| |||||| | || | || | || || || | || || || ||
Sbjct 3349 ATCTT-TGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTT 3407
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| || | |||||| |||||||| |||||
Sbjct 3408 TCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324604539713160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |