Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5062 104 2e-17 seq894 93.3 3e-14 >seq5062 Length=19932 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | || | || |||||||||| || || ||||| ||||| || || ||| Sbjct 11078 CCTCCACGTAAACGCAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAA 11137 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || || || || ||||| || ||||| ||||| || || | || Sbjct 11138 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGTTGATCAGGTGGG 11197 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | |||||||| || ||||| |||||| || ||||||| || || ||| Sbjct 11198 ATTCCCTCCTTATCCTGGATCTTGGTTTTGAC--AT--TATCGATAGTGTCGGAGGACTC 11253 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| |||||||| |||||||| ||||| || ||||||||||| Sbjct 11254 GACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 11304 >seq894 Length=6424 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || || |||||||| || |||||||| ||| |||| ||| Sbjct 3229 ACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCC 3288 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||| || || || | |||||| ||||| | || | ||||||||||| Sbjct 3289 AATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGG 3348 Query 34893 ATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||| |||||| | || | || | || || || | || || || || Sbjct 3349 ATCTT-TGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTT 3407 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||| |||||||| ||||| Sbjct 3408 TCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324604539713160