Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4887 183 3e-41
>seq4887
Length=16554
Score = 183 bits (202), Expect = 3e-41
Identities = 503/761 (66%), Gaps = 20/761 (3%)
Strand=Plus/Minus
Query 47991 TTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATG 48050
||||| || || || ||||||||||| ||||| ||||||| || |||| | |||| |
Sbjct 10986 TTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGG 10927
Query 48051 ATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCT----AGCTTTA--TTATCATGT 48104
|| || | ||||| | |||||| || | ||| | ||||| || ||
Sbjct 10926 ATGGAATACCAAAGCTTTTGAGCCTTGAT----GGTCTTACGACCTTTACCTTGTCTC-- 10873
Query 48105 TCGTAT--TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162
||||| || || | | | ||| |||||||| ||||| |||| | | || || ||||
Sbjct 10872 TCGTAACCTTCATAGAGAGC--CTCGAATTCATCACCATAGACATCAGCCAAGCCTGGAC 10815
Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222
|||| ||||| ||||| | || ||| || | | |||| || | |||| || | ||
Sbjct 10814 ATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGAT 10755
Query 48223 CTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281
|||| ||||| || || ||| || | ||| | | ||| | ||| || ||||| |||
Sbjct 10754 CTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTC 10696
Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341
|| || || | || || | | ||| |||||||||||||| | || | || | |
Sbjct 10695 TTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAAT 10636
Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401
|||| || || || ||||| ||||| || | |||||| || || ||||| ||||||
Sbjct 10635 GCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGA 10576
Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461
| ||| || || ||||| || || |||| || || || | ||| || ||| ||||
Sbjct 10575 AGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCA 10516
Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521
| || | || | ||| |||||||| || | || || || | ||||||
Sbjct 10515 CGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATC 10456
Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
|| | |||||||| || || || |||||||| || |||||| | || || ||
Sbjct 10455 TTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGAT 10396
Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641
|| | || | || ||| || | | || | ||||||||| || || |||| ||
Sbjct 10395 GAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTAT 10336
Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACC 48700
|| | || | ||| || |||||||| || || || ||||| || | || |||||
Sbjct 10335 TTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGAATACC 10277
Query 48701 TATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741
| | |||||||| | ||| | ||| || | |||| |||
Sbjct 10276 AACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAA 10236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562057191385800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |