Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4887 183 3e-41 >seq4887 Length=16554 Score = 183 bits (202), Expect = 3e-41 Identities = 503/761 (66%), Gaps = 20/761 (3%) Strand=Plus/Minus Query 47991 TTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATG 48050 ||||| || || || ||||||||||| ||||| ||||||| || |||| | |||| | Sbjct 10986 TTGTTGCAAGCATCTTTGTAAAGCATGAAAGGGTTTCCAGTCTCAGTCTGGGCCTCAAGG 10927 Query 48051 ATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCT----AGCTTTA--TTATCATGT 48104 || || | ||||| | |||||| || | ||| | ||||| || || Sbjct 10926 ATGGAATACCAAAGCTTTTGAGCCTTGAT----GGTCTTACGACCTTTACCTTGTCTC-- 10873 Query 48105 TCGTAT--TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGAC 48162 ||||| || || | | | ||| |||||||| ||||| |||| | | || || |||| Sbjct 10872 TCGTAACCTTCATAGAGAGC--CTCGAATTCATCACCATAGACATCAGCCAAGCCTGGAC 10815 Query 48163 ATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATAT 48222 |||| ||||| ||||| | || ||| || | | |||| || | |||| || | || Sbjct 10814 ATTCGTTAGGGCACATGAGTGTCCAGTCTCCGTTCTTTTCAACACGCTTCATGAAGAGAT 10755 Query 48223 CTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 |||| ||||| || || ||| || | ||| | | ||| | ||| || ||||| ||| Sbjct 10754 CTGGAATCCAGAGGGC-ATAGAAGAGATCGCGTGCTCTAACTTCCTCTTTGCCGTGGTTC 10696 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 || || || | || || | | ||| |||||||||||||| | || | || | | Sbjct 10695 TTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCATGGTTCAAGGTAAACGGCAAAT 10636 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 |||| || || || ||||| ||||| || | |||||| || || ||||| |||||| Sbjct 10635 GCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTAGCGGTGTTGTTGAAAACTCGA 10576 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 | ||| || || ||||| || || |||| || || || | ||| || ||| |||| Sbjct 10575 AGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGCCTGCAATGTAGGCACCAGTAGCA 10516 Query 48462 CTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 | || | || | ||| |||||||| || | || || || | |||||| Sbjct 10515 CGGATTCTGTGGATGTTGAGACCAATACCACCAGCGTTCTTTGAAATCATAGCACAAATC 10456 Query 48522 TTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || | |||||||| || || || |||||||| || |||||| | || || || Sbjct 10455 TTCAAAGTATCATAGATACCATCAATACTATCCTCCTTCATATCAATAAGGAAGCATGAT 10396 Query 48582 GACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCAT 48641 || | || | || ||| || | | || | ||||||||| || || |||| || Sbjct 10395 GAAAGCTGAGCCTGTGGAGTACCCGCAGAGAAGAGTGTTGGAGAAGCGTGTGTAAAGTAT 10336 Query 48642 TTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACC 48700 || | || | ||| || |||||||| || || || ||||| || | || ||||| Sbjct 10335 TTGTTGGACATCAAGTTGTATGTTTCGATGGCACTTTCAATATCATCACCG-TGAATACC 10277 Query 48701 TATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 | | |||||||| | ||| | ||| || | |||| ||| Sbjct 10276 AACGGCAACACGCATGATCATTTGTTGTGGACGTTCAGCAA 10236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562057191385800