Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq4803 114 1e-19
seq78 105 5e-17
seq5547 100 2e-15
seq5020 96.9 3e-14
>seq4803
Length=18444
Score = 114 bits (126), Expect = 1e-19
Identities = 183/260 (70%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053
||| ||||| ||||| || ||||| || |||||| ||| | | | ||| | | |
Sbjct 359 TATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAAT 300
Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113
||||||||||||||||| ||||| ||| |||| ||||| || | ||| ||||||| ||
Sbjct 299 CGAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGA 240
Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173
||||| | ||| |||| ||||| || || | |||| | || || || ||| ||
Sbjct 239 TACTGAGCGTTTGATTGGAGATGCCGCCAAGAACCAAGTCGCTATGAACCCATACAACAC 180
Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232
| || |||||||| |||||||| || | ||||| | ||| | || || || |
Sbjct 179 CGTCTTCGATGCTAAGCGTTTAATCGGTCGCAAGTTCGCA-GATGCTGAAGTCCAAGCCG 121
Query 550233 ATATGAAGCATTGGCCTTTC 550252
| |||||||||| || |||
Sbjct 120 ACATGAAGCATTTCCCATTC 101
>seq78
Length=25977
Score = 105 bits (116), Expect = 5e-17
Identities = 458/717 (64%), Gaps = 23/717 (3%)
Strand=Plus/Minus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
|||||||||||||| | || || ||||| | ||||| || ||||||||||| |
Sbjct 24955 GCTCTTCGTCGTCTCCGCACAGCATGCGAGCGTGCCAAGCGTACTCTTTCATCTTCCGCC 24896
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| ||| | || ||| | || || | || ||||| || || | | || | || |
Sbjct 24895 CAGACCTCCATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCCATCACC 24836
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| ||| ||||| || | || || ||||| | || | ||||| ||
Sbjct 24835 CGTGCCCGTTTTGAGGAACTCTGCCAGGACCTCTTCCGTTCCACCACCACTCCAGTCGAC 24776
Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134
| || | ||| | |||||||||||||||| ||| || || || || ||||| |||
Sbjct 24775 CGTGTCCTCGCCGATGCCAAGATTGATAAATCCAGAGTTCACGAGATCGTCCTTGTCGGT 24716
Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAA 552191
|| || || | || || || | ||| | | | | | || ||||| |||||
Sbjct 24715 GGTTCCACCCGTATCCCACGTATCC---AAAAGCTCATTACCGACTACTTCAACGGTAAG 24659
Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249
| ||| |||| | || || |||||||||||||| || ||||| || | || |
Sbjct 24658 GAGCCAAAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGG 24601
Query 552250 CAGCTATTCTTTCTGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306
| || ||||| ||||| | | || || || | || || | || | ||| | ||||
Sbjct 24600 CTGCCATTCTCTCTGGTGACACCTCATCCAAGTCCACCAACGAGATCCTTCTTCTCGATG 24541
Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366
| | || | ||||| ||| | || || | ||| || ||||| || || ||
Sbjct 24540 TCGCCCCATTGTCTCTCGGTATCGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCC 24481
Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426
|||| || || || ||| || || || || || || || | || || || |||
Sbjct 24480 GAAACACCACCATCCCTACCAAGAAGTCCGAGGTTTTCTCCACCTTCTCTGACAACCAAC 24421
Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486
||| ||| |||||| | || || || || | || ||| || ||||| ||||
Sbjct 24420 CTGGTGTACTGATTCAAGTATTCGAGGGTGAGCGTCAACGCACCAAGGATAA----CAAC 24365
Query 552487 TTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541
||| | | || || | | ||||| || ||||| || ||||| || || |||||
Sbjct 24364 TTGATGGGCAAATTCGAACTCA-CTGGTATCCCACCTGCACCACGTGGTGTTCCTCAAAT 24306
Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598
|| || || |||||||| |||||||| || || |||| || ||||| ||| ||
Sbjct 24305 CGAGGTCACATTCGATATTGATGCCAACGGTATCATGAACGTCTCTGCTCTTGAGAA 24249
Score = 89.7 bits (98), Expect = 4e-12
Identities = 183/272 (67%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
|| ||||| |||| || | || ||||||||||| || | || |||| | | || ||
Sbjct 25830 AAGCAATTCACACCTGAGGAGATCTCATCTATGGTCTTGGTCAAGATGAGAGAGACTGCT 25771
Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429
|||| ||||| | || | | || || | || || |||||||| || |
Sbjct 25770 GAGGCTTACCTTGGTGGAACTGTCAACAACGCTGTCGTCACCGTCCCAGCATACTTCACC 25711
Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489
||||| ||||||||||| || || || ||||| | |||||||| ||||| ||||| |
Sbjct 25710 GACTCTCAACGTCAAGCCACAAAGGACGCTGGTCTGATTGCTGGTCTTAACGTTCTCAGA 25651
Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAA 550549
|| || || || ||||| || || || |||| || || | || || | ||
Sbjct 25650 ATCATTAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTTGGACAAGAAGGTCGAGGGT 25591
Query 550550 GAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|||| ||| || |||||||| ||| ||| ||
Sbjct 25590 GAACGTAACGTTCTCATCTTCGATCTTGGTGG 25559
>seq5547
Length=23933
Score = 100 bits (110), Expect = 2e-15
Identities = 116/155 (75%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 550379 GTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| ||||||| || | | || || || ||||| ||||| || || || ||| ||
Sbjct 9753 GTTGGGCAAGAAGGTTTCCAAGGCCGTCATCACTGTTCCAGCCTACTTCAACGACAACCA 9694
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
|||||| ||||| || |||||||| ||||| || || || || || ||||| || ||
Sbjct 9693 ACGTCAGGCTACCAAGGATGCTGGTGCCATTGCCGGTCTCAACGTCCTCCGTATCATTAA 9634
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532
||||| ||||||||||| | ||||| || ||||
Sbjct 9633 CGAACCCACTGCTGCTGCCATCGCATACGGTCTTG 9599
>seq5020
Length=13931
Score = 96.9 bits (106), Expect = 3e-14
Identities = 108/143 (76%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || || ||||| ||||| || || || ||||||||||| | |||
Sbjct 1638 ACTGTTCCCGCTTACTTCAACGACTCCCAACGCCAGGCGACCAAAGATGCTGGTCAAATT 1697
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || | || |||||| | | |||| || || || || |||||||||||||||||
Sbjct 1698 GCCGGTTTGAACGTTCTTAGAGTCGTCAACGAGCCAACCGCAGCTGCACTTGCATATGGC 1757
Query 550529 CTTGATAAACATAATGATCAAGA 550551
||||| ||| || | || |||||
Sbjct 1758 CTTGAGAAAGATGAGGA-CAAGA 1779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028907563274050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |