Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4803 114 1e-19 seq78 105 5e-17 seq5547 100 2e-15 seq5020 96.9 3e-14 >seq4803 Length=18444 Score = 114 bits (126), Expect = 1e-19 Identities = 183/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| ||||| || ||||| || |||||| ||| | | | ||| | | | Sbjct 359 TATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAAT 300 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 ||||||||||||||||| ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 299 CGAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGA 240 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||||| | ||| |||| ||||| || || | |||| | || || || ||| || Sbjct 239 TACTGAGCGTTTGATTGGAGATGCCGCCAAGAACCAAGTCGCTATGAACCCATACAACAC 180 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || |||||||| |||||||| || | ||||| | ||| | || || || | Sbjct 179 CGTCTTCGATGCTAAGCGTTTAATCGGTCGCAAGTTCGCA-GATGCTGAAGTCCAAGCCG 121 Query 550233 ATATGAAGCATTGGCCTTTC 550252 | |||||||||| || ||| Sbjct 120 ACATGAAGCATTTCCCATTC 101 >seq78 Length=25977 Score = 105 bits (116), Expect = 5e-17 Identities = 458/717 (64%), Gaps = 23/717 (3%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||||||||| | || || ||||| | ||||| || ||||||||||| | Sbjct 24955 GCTCTTCGTCGTCTCCGCACAGCATGCGAGCGTGCCAAGCGTACTCTTTCATCTTCCGCC 24896 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || ||| | || ||| | || || | || ||||| || || | | || | || | Sbjct 24895 CAGACCTCCATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCCATCACC 24836 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | ||| ||||| || | || || ||||| | || | ||||| || Sbjct 24835 CGTGCCCGTTTTGAGGAACTCTGCCAGGACCTCTTCCGTTCCACCACCACTCCAGTCGAC 24776 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 | || | ||| | |||||||||||||||| ||| || || || || ||||| ||| Sbjct 24775 CGTGTCCTCGCCGATGCCAAGATTGATAAATCCAGAGTTCACGAGATCGTCCTTGTCGGT 24716 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAA 552191 || || || | || || || | ||| | | | | | || ||||| ||||| Sbjct 24715 GGTTCCACCCGTATCCCACGTATCC---AAAAGCTCATTACCGACTACTTCAACGGTAAG 24659 Query 552192 AAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAG 552249 | ||| |||| | || || |||||||||||||| || ||||| || | || | Sbjct 24658 GAGCCAAAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGG 24601 Query 552250 CAGCTATTCTTTCTGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATG 552306 | || ||||| ||||| | | || || || | || || | || | ||| | |||| Sbjct 24600 CTGCCATTCTCTCTGGTGACACCTCATCCAAGTCCACCAACGAGATCCTTCTTCTCGATG 24541 Query 552307 TTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATA 552366 | | || | ||||| ||| | || || | ||| || ||||| || || || Sbjct 24540 TCGCCCCATTGTCTCTCGGTATCGAGACTGCTGGTGGACAGATGACCAAGCTCATTCCCC 24481 Query 552367 GAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAA 552426 |||| || || || ||| || || || || || || || | || || || ||| Sbjct 24480 GAAACACCACCATCCCTACCAAGAAGTCCGAGGTTTTCTCCACCTTCTCTGACAACCAAC 24421 Query 552427 CTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 ||| ||| |||||| | || || || || | || ||| || ||||| |||| Sbjct 24420 CTGGTGTACTGATTCAAGTATTCGAGGGTGAGCGTCAACGCACCAAGGATAA----CAAC 24365 Query 552487 TTGGT-----ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 ||| | | || || | | ||||| || ||||| || ||||| || || ||||| Sbjct 24364 TTGATGGGCAAATTCGAACTCA-CTGGTATCCCACCTGCACCACGTGGTGTTCCTCAAAT 24306 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 || || || |||||||| |||||||| || || |||| || ||||| ||| || Sbjct 24305 CGAGGTCACATTCGATATTGATGCCAACGGTATCATGAACGTCTCTGCTCTTGAGAA 24249 Score = 89.7 bits (98), Expect = 4e-12 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| |||| || | || ||||||||||| || | || |||| | | || || Sbjct 25830 AAGCAATTCACACCTGAGGAGATCTCATCTATGGTCTTGGTCAAGATGAGAGAGACTGCT 25771 Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 |||| ||||| | || | | || || | || || |||||||| || | Sbjct 25770 GAGGCTTACCTTGGTGGAACTGTCAACAACGCTGTCGTCACCGTCCCAGCATACTTCACC 25711 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 ||||| ||||||||||| || || || ||||| | |||||||| ||||| ||||| | Sbjct 25710 GACTCTCAACGTCAAGCCACAAAGGACGCTGGTCTGATTGCTGGTCTTAACGTTCTCAGA 25651 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAA 550549 || || || || ||||| || || || |||| || || | || || | || Sbjct 25650 ATCATTAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTTGGACAAGAAGGTCGAGGGT 25591 Query 550550 GAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||| ||| || |||||||| ||| ||| || Sbjct 25590 GAACGTAACGTTCTCATCTTCGATCTTGGTGG 25559 >seq5547 Length=23933 Score = 100 bits (110), Expect = 2e-15 Identities = 116/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 550379 GTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| ||||||| || | | || || || ||||| ||||| || || || ||| || Sbjct 9753 GTTGGGCAAGAAGGTTTCCAAGGCCGTCATCACTGTTCCAGCCTACTTCAACGACAACCA 9694 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 |||||| ||||| || |||||||| ||||| || || || || || ||||| || || Sbjct 9693 ACGTCAGGCTACCAAGGATGCTGGTGCCATTGCCGGTCTCAACGTCCTCCGTATCATTAA 9634 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 ||||| ||||||||||| | ||||| || |||| Sbjct 9633 CGAACCCACTGCTGCTGCCATCGCATACGGTCTTG 9599 >seq5020 Length=13931 Score = 96.9 bits (106), Expect = 3e-14 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || ||||| ||||| || || || ||||||||||| | ||| Sbjct 1638 ACTGTTCCCGCTTACTTCAACGACTCCCAACGCCAGGCGACCAAAGATGCTGGTCAAATT 1697 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || | || |||||| | | |||| || || || || ||||||||||||||||| Sbjct 1698 GCCGGTTTGAACGTTCTTAGAGTCGTCAACGAGCCAACCGCAGCTGCACTTGCATATGGC 1757 Query 550529 CTTGATAAACATAATGATCAAGA 550551 ||||| ||| || | || ||||| Sbjct 1758 CTTGAGAAAGATGAGGA-CAAGA 1779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028907563274050