Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1649 82.4 6e-11 >seq1649 Length=6120 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 ||||||| || ||||||| || | ||| ||||||| || || || ||||| | | Sbjct 5232 TGGGAAACTCCCTCGGCTCCCGCTGCAACTGCGTCTTCAACGCCTCAACATGATCGACAT 5291 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 ||||||| || || |||| || || ||| || | || || || |||| | Sbjct 5292 AGACGTGCGCATCCCCCATCGTATGCGTAAATGTGCCAGCCTCCAGATCGCACGCGTGCG 5351 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | ||||| || || | | ||| ||||||||||| ||||| |||||||| ||||||| Sbjct 5352 CTAACATGTGTGTTAGTAAGGCGTAACTGGCGATGTTGAAGGGCACCCCGAGTCCCATGT 5411 Query 29945 CCCCCGACCTCTGGTAGAGCTGACA 29969 | | || | ||||| || || || Sbjct 5412 CGCAGGAGCGTTGGTATAGTTGGCA 5436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408581021701685