Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq894 118 8e-22
>seq894
Length=6424
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| ||||| | || || || ||||| || ||||| || | | || | | |||| ||
Sbjct 3456 AACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTC 3515
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||| |||||||| || || || | ||| |||||||| || ||||||||||| || |||||
Sbjct 3516 CAACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTG 3575
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||| || ||||| | || | ||| ||||| | || || || | ||||| || ||
Sbjct 3576 AATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTT 3635
Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
||||| | ||| || || || ||||||||
Sbjct 3636 TCCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| ||||| | || ||||| || || || ||||| |||| | ||| | | | || ||
Sbjct 3684 AACCAAATGTAAAGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTC 3743
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
| |||||| || || || |||||||| |||||||| || || || || || ||||||||
Sbjct 3744 AAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTATCTTG 3803
Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439
||| || || ||| | || | ||| || || | ||| || |||||||||| || ||
Sbjct 3804 AATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTGATAGTCTT 3863
Query 101440 GCCGGTTAAAGTTTTTACAAATAT 101463
|||||| | ||| || || | |||
Sbjct 3864 GCCGGTGAGAGTCTTGACGACTAT 3887
Score = 111 bits (122), Expect = 1e-19
Identities = 139/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338
|| ||||| || |||||||| | | |||||| |||| ||||||||||| || || ||
Sbjct 3247 TCCTTTTGAATGTTGTAATCCGAAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCGAAA 3306
Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398
||||| || ||||| ||||| || ||||| || || ||||| || ||| || || |
Sbjct 3307 ATCAATCGTTGTTGGTCGGGTGGGATGCCCTCCTTGTCTTGGATCTTTGTCTTGACGTTA 3366
Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458
|| | || || |||| |||||| || | || | || || || || ||||| || |||
Sbjct 3367 TCAATGGTATCTGACGATTCCACCTCTAACGTAATTGTCTTTCCAGTCAAAGTCTTAACA 3426
Query 101459 AATATCTGCAT 101469
|| || |||||
Sbjct 3427 AAGATTTGCAT 3437
Score = 100 bits (110), Expect = 2e-16
Identities = 130/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||| || ||||| || || || || ||||| ||| | ||| | |||| || | |||
Sbjct 3974 ATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTACGACCATCCTCGAGTTG 4033
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| |||||||||||||| || || ||||| || || ||||| || || ||
Sbjct 4034 CTTGCCAGCAAAGATCAAACGCTGTTGGTCAGGAGGAATACCCTCCTTATCCTGGATCTT 4093
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| || | || | |||||| || | ||| || ||||| |||| || ||||||||
Sbjct 4094 AGTCTTGACGTTGTCGATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGT 4153
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396242926272165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |