Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq894 136 3e-27
>seq894
Length=6424
Score = 136 bits (150), Expect = 3e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || | |||||||| |||||||| |||||||| || ||| ||| |
Sbjct 3220 AGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGTTCTA 3279
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||| ||||| || || || |||| ||| ||||| || | || | |||||||
Sbjct 3280 CCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCCCTCC 3339
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||| || || | | | | ||||||| |||||||| | ||||
Sbjct 3340 TTGTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAACGTA 3399
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| |||||||| || ||||| || |||||
Sbjct 3400 ATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 3437
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||||| || ||| |||||||| ||||| || || || | || | || |||
Sbjct 3457 ACCAAATGTAAAGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCC 3516
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
||||||||||| || || || || || |||||||| | |||| ||| |||||||| |
Sbjct 3517 AACTGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGA 3576
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| ||||| | | || || || | ||| ||||||| || || || |||
Sbjct 3577 ATCTTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAAAGTGATTGTCTTT 3636
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | ||| || || |||||||||||
Sbjct 3637 CCGGTAAGAGTCTTGACGAAAATCTGCAT 3665
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380903499537435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |