Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4745 134 3e-26 >seq4745 Length=15183 Score = 134 bits (148), Expect = 3e-26 Identities = 344/515 (67%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| || |||| ||||| |||||||| ||||| || | | || ||||| ||| Sbjct 8694 TGGTAGTCGCCAACTCGCTTCTCGAAGAAGTTGGTCTTGCCTGCGAGAGAAATGTTTTCC 8753 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCA-GCAG 47958 |||||| ||| || |||| || || ||| | ||| ||| | || | || Sbjct 8754 ATGAAGTCGAATGGATTGGCTGATCGGTAAACCT-TCTCATTACCAAGAGCAACAAGAAG 8812 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | || |||||| |||| ||||||| ||| | ||||||||| | ||| | Sbjct 8813 ACGGTCTGCGACGAACTCAATGTATTGCTTCATCAAATCCGAGTTCATGCCAAGGAGAG- 8871 Query 48019 CACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | || ||| | || | || || | ||| ||||| || || || | || | Sbjct 8872 CACATGGAAGAGCTTCCGTCAAGAATTCTTGCTCAATCTGGACAGCCTCTGTAATAACAT 8931 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCG-CAGGTGCTTGGCATAGAGCATGCAGGCA 48136 || |||| | | || | | ||| || |||| | |||||| |||||| Sbjct 8932 CCTGAACG-GCTTGTTTGCTTGGGCGATGCTTCAAGTGCGAGA---AGAGCAGGCAGGCG 8987 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | || | || ||||| ||| ||||||| ||||||| ||| |||||||| | Sbjct 8988 AAGTCGGTATGAAGACCCTCGTCACGGGAGATGAGCTCGTTGGAAAAGGTGAGACCAGCC 9047 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | || | || |||||||||||||| | ||||| || ||| ||||||||| || Sbjct 9048 ATCAAGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAAGGAACCACTGAAGAAGATACCT 9107 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || || ||||| ||| ||| | | | || | || |||||| || ||||| Sbjct 9108 TCAACGGCAGCGAATGCGACGAGACGTTGAGCAAAGGTAGAGTTCTTATCCTCAATCCAT 9167 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 || |||||||| ||||||||||| ||||| || Sbjct 9168 CTAACAGCCCAGTCGGCCTTCTTCTTAATGCAAGG 9202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931447273644800