Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4745 114 2e-20 >seq4745 Length=15183 Score = 114 bits (126), Expect = 2e-20 Identities = 303/466 (65%), Gaps = 7/466 (2%) Strand=Plus/Minus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||| | |||| |||| | || || || || || ||||| || || || ||||| |||| Sbjct 9153 AGAACTCTACCTTTGCTCAACGTCTCGTCGCATTCGCTGCCGTTGAAGGTATCTTCTTCA 9094 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 | ||||| || || | || |||||||||||| || || ||| | || || || Sbjct 9093 GTGGTTCCTTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACCT 9034 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 ||||||||||||||||| | | ||||||||||| || | || || ||||||||||||| Sbjct 9033 TTTCCAACGAGCTCATCTCCCGTGACGAGGGTCTTCATACCGACTTCGCCTGCCTGCTCT 8974 Query 26039 ACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGG 26098 | || |||||| || || || | |||| | | | || | ||||| Sbjct 8973 TCTCG---CACTTGAAGCATCGCCCAAGCAAACAAGCCGTTCAGGATGTTATTACAGAGG 8917 Query 26099 CTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGA 26158 |||| |||| ||| | || || | ||||||| Sbjct 8916 CTGTCCAGATTGAGCAAGAATTCTTGACGGAAGCTCTTCCATGTGCTCTCCTTGGCATGA 8857 Query 26159 ACAACAGA-CTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCT 26216 || | || | |||| ||||||||||||| || || |||| ||| | ||| | | Sbjct 8856 AC-TCGGATTTGATGAAGCAATACATTGAGTTCGTCGCAGACCGTCTTCTTGTTGCTCTT 8798 Query 26217 GGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTT 26276 || | | | | | ||| | | | || || |||||||| ||||||||||| || | Sbjct 8797 GGTAAT-GAGAAGGTTTACCGATCAGCCAATCCATTCGACTTCATGGAAAACATTTCTCT 8739 Query 26277 GGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 | ||| |||||||||||||| || ||| | || |||||||| ||| Sbjct 8738 CGCAGGCAAGACCAACTTCTTCGAGAAGCGAGTTGGCGACTACCAA 8693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928759520436800