Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12-
31] 7,345 sequences; 40,250,382 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq5771 109 4e-18
seq894 109 4e-18
seq5062 105 4e-17
seq4803 93.3 3e-13
seq78 89.7 3e-12
seq2353 87.8 1e-11
>seq5771
Length=11851
Score = 109 bits (120), Expect = 4e-18
Identities = 126/170 (74%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|||||||||| | ||| | ||| ||||||||||||||||| || || | |||||||
Sbjct 7528 TTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGT 7587
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
||||| || |||||||| ||||||||||||||||| |||||| || || || ||
Sbjct 7588 TGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCG 7647
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763
| | | |||||||| || || ||||| || | ||||| |||||
Sbjct 7648 GAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 7697
>seq894
Length=6424
Score = 109 bits (120), Expect = 4e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||| || || ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 3520 TGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGAATC 3579
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| || || || |||||||||| || | || | ||| || || || || ||
Sbjct 3580 TTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAA-AGTGATTGTCTTTCC 3638
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
||| |||||||| |||||||| ||
Sbjct 3639 GGTAAGAGTCTTGACGAAAATCTG 3662
Score = 104 bits (114), Expect = 2e-16
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| ||||||||||| ||||| || || | ||||||||||||||| || || || |||||
Sbjct 3739 TCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTA 3798
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
||||||||||| || ||| || |||||||| | | | ||||| || |||
Sbjct 3799 TCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTGATA 3858
Query 480738 GTTTTACCGGTGAGAGTCTTAACGA 480762
|| || |||||||||||||| ||||
Sbjct 3859 GTCTTGCCGGTGAGAGTCTTGACGA 3883
Score = 89.7 bits (98), Expect = 3e-12
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | || | || || || || || || ||||| | |||||
Sbjct 3216 ACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGT 3275
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
||| ||| || | |||||||||||| ||||| | |||||||| || || || || ||
Sbjct 3276 TCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCC 3335
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||| |||||| ||||| ||||| ||||| | | || |
Sbjct 3336 CTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAA 3395
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | ||||||||| || |||||
Sbjct 3396 CGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTG 3434
>seq5062
Length=19932
Score = 105 bits (116), Expect = 4e-17
Identities = 129/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|| ||||| | ||||| | | |||||| |||||||| || || || || |||||||||
Sbjct 11126 TTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGT 11185
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|||||||| || ||||| ||||| || || ||||| ||||||| || ||||| ||
Sbjct 11186 TGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCG 11245
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | || ||||| || |||||||| ||||| ||||| ||||| || ||
Sbjct 11246 GAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTG 11301
>seq4803
Length=18444
Score = 93.3 bits (102), Expect = 3e-13
Identities = 180/266 (68%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|| ||||| ||||| || || || ||| |||||||| | | | | ||| | | |
Sbjct 358 ATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAATC 299
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| ||||||||||||||||| || |||| || || || | ||| |||| || ||
Sbjct 298 GAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGAT 239
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
||||| | | | ||||||||||| || || | |||| || || || || ||
Sbjct 238 ACTGAGCGTTTGATTGGAGATGCCGCCAAGAACCAAGTCGCTATGAACCCATACAACACC 179
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || |||||||| | || || ||||| || || | ||| | |||||| | ||
Sbjct 178 GTCTTCGATGCTAAGCGTTTAATCGGTCGCAAGTTCGCAGATGCTGAAGTCCAAGCCGAC 119
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGAT 474597
||| |||| || || ||||| ||
Sbjct 118 ATGAAGCATTTCCCATTCAAGGTCAT 93
>seq78
Length=25977
Score = 89.7 bits (98), Expect = 3e-12
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC- 474705
|| ||||| |||| || | || || || ||||| || | ||| |||| | | || ||
Sbjct 25830 AAGCAATTCACACCTGAGGAGATCTCATCTATGGTCTTGGTCAAGATGAGAGAGACTGCT 25771
Query 474706 GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765
||| | || ||||| | || | | || || | || || |||||||| || |
Sbjct 25770 GAGG-CTTACCTTGGTGGAACTGTCAACAACGCTGTCGTCACCGTCCCAGCATACTTCAC 25712
Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825
|| |||||||||||||| || || || || || ||||| |||||||| ||| | |
Sbjct 25711 CGACTCTCAACGTCAAGCCACAAAGGACGCTGGTCTGATTGCTGGTCTTAACGTTCTCAG 25652
Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|| ||||| || || || |||||||| ||||||| ||| | || |||||
Sbjct 25651 AATCATTAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTTGGACAAGAA 25601
>seq2353
Length=2042
Score = 87.8 bits (96), Expect = 1e-11
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391
|||||||| ||||| |||||||| ||| ||| || | ||| |||||| || |||||
Sbjct 1878 ATTGGTATCGATTTGGGAACTACATACTCTTGCGTCGGTGTGATGCAAAAGGGCAAAGTC 1937
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| | | || |||||||| | |||| |||||||||||||| | ||||| ||
Sbjct 1938 GAAATCTTGACAAACGACCAAGGACACAGAATTACACCATCATATGTAGCATTTACCGAC 1997
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492
|||| | | || || || ||||| |||| |||||
Sbjct 1998 GAAGAACGATTAGTAGGTGACGCAGCTAAGAATCAGGCTGC 2038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267864137312060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |