Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5771 109 4e-18 seq894 109 4e-18 seq5062 105 4e-17 seq4803 93.3 3e-13 seq78 89.7 3e-12 seq2353 87.8 1e-11 >seq5771 Length=11851 Score = 109 bits (120), Expect = 4e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||||| | ||| | ||| ||||||||||||||||| || || | ||||||| Sbjct 7528 TTATAATCAGACAAAGTGCGTCCATCCTCAAGTTGCTTTCCAGCGAAGATCAAACGTTGT 7587 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || |||||||| ||||||||||||||||| |||||| || || || || Sbjct 7588 TGATCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCG 7647 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | | |||||||| || || ||||| || | ||||| ||||| Sbjct 7648 GAGGATTCGACCTCAAGGGTGATGGTCTTACCCGTCAAGGTCTTGACGAA 7697 >seq894 Length=6424 Score = 109 bits (120), Expect = 4e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||| || || ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 3520 TGCTTACCAGCGAAGATGAGACGTTGTTGATCAGGTGGAATGCCTTCCTTGTCTTGAATC 3579 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || || || || |||||||||| || | || | ||| || || || || || Sbjct 3580 TTGCTCTTTACGTTGTCGATAGTATCAGATGACTCAACCTCCAA-AGTGATTGTCTTTCC 3638 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| |||||||| || Sbjct 3639 GGTAAGAGTCTTGACGAAAATCTG 3662 Score = 104 bits (114), Expect = 2e-16 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || ||||||||||| ||||| || || | ||||||||||||||| || || || ||||| Sbjct 3739 TCCTCAAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGGGGGATACCCTCCTTA 3798 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||||||||| || ||| || |||||||| | | | ||||| || ||| Sbjct 3799 TCTTGAATCTTGGTCTTAACATTGTCGATAGTATCCGAAGATTCAACCTCAAGAGTGATA 3858 Query 480738 GTTTTACCGGTGAGAGTCTTAACGA 480762 || || |||||||||||||| |||| Sbjct 3859 GTCTTGCCGGTGAGAGTCTTGACGA 3883 Score = 89.7 bits (98), Expect = 3e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | || | || || || || || || ||||| | ||||| Sbjct 3216 ACGGAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTTTGAATGTTGTAATCCGAAAGAGT 3275 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 ||| ||| || | |||||||||||| ||||| | |||||||| || || || || || Sbjct 3276 TCTACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCGGGTGGGATGCC 3335 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| |||||| ||||| ||||| ||||| | | || | Sbjct 3336 CTCCTTGTCTTGGATCTTTGTCTTGACGTTATCAATGGTATCTGACGATTCCACCTCTAA 3395 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||||||||| || ||||| Sbjct 3396 CGTAATTGTCTTTCCAGTCAAAGTCTTAACAAAGATTTG 3434 >seq5062 Length=19932 Score = 105 bits (116), Expect = 4e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||| | | |||||| |||||||| || || || || ||||||||| Sbjct 11126 TTGTAATCGGAAAGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATTAGACGTTGT 11185 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| || ||||| ||||| || || ||||| ||||||| || ||||| || Sbjct 11186 TGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGTTTTGACATTATCGATAGTGTCG 11245 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | || ||||| || |||||||| ||||| ||||| ||||| || || Sbjct 11246 GAGGACTCGACCTCTAGGGTGATGGTTTTACCCGTGAGGGTCTTGACGAAGATCTG 11301 >seq4803 Length=18444 Score = 93.3 bits (102), Expect = 3e-13 Identities = 180/266 (68%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 || ||||| ||||| || || || ||| |||||||| | | | | ||| | | | Sbjct 358 ATCGGTATCGATTTGGGTACCACCTACTCTTGTGTAGGTATCTTCAGAGATGACAGAATC 299 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| ||||||||||||||||| || |||| || || || | ||| |||| || || Sbjct 298 GAAATTATTGCCAATGACCAAGGAAACCGAACCACTCCTTCGTTCGTTGCTTTCACCGAT 239 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | | | ||||||||||| || || | |||| || || || || || Sbjct 238 ACTGAGCGTTTGATTGGAGATGCCGCCAAGAACCAAGTCGCTATGAACCCATACAACACC 179 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || |||||||| | || || ||||| || || | ||| | |||||| | || Sbjct 178 GTCTTCGATGCTAAGCGTTTAATCGGTCGCAAGTTCGCAGATGCTGAAGTCCAAGCCGAC 119 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGAT 474597 ||| |||| || || ||||| || Sbjct 118 ATGAAGCATTTCCCATTCAAGGTCAT 93 >seq78 Length=25977 Score = 89.7 bits (98), Expect = 3e-12 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC- 474705 || ||||| |||| || | || || || ||||| || | ||| |||| | | || || Sbjct 25830 AAGCAATTCACACCTGAGGAGATCTCATCTATGGTCTTGGTCAAGATGAGAGAGACTGCT 25771 Query 474706 GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAA 474765 ||| | || ||||| | || | | || || | || || |||||||| || | Sbjct 25770 GAGG-CTTACCTTGGTGGAACTGTCAACAACGCTGTCGTCACCGTCCCAGCATACTTCAC 25712 Query 474766 TGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACG 474825 || |||||||||||||| || || || || || ||||| |||||||| ||| | | Sbjct 25711 CGACTCTCAACGTCAAGCCACAAAGGACGCTGGTCTGATTGCTGGTCTTAACGTTCTCAG 25652 Query 474826 TATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || ||||| || || || |||||||| ||||||| ||| | || ||||| Sbjct 25651 AATCATTAACGAGCCTACCGCAGCCGCCATTGCTTACGGTTTGGACAAGAA 25601 >seq2353 Length=2042 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||| ||||| |||||||| ||| ||| || | ||| |||||| || ||||| Sbjct 1878 ATTGGTATCGATTTGGGAACTACATACTCTTGCGTCGGTGTGATGCAAAAGGGCAAAGTC 1937 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| | | || |||||||| | |||| |||||||||||||| | ||||| || Sbjct 1938 GAAATCTTGACAAACGACCAAGGACACAGAATTACACCATCATATGTAGCATTTACCGAC 1997 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 |||| | | || || || ||||| |||| ||||| Sbjct 1998 GAAGAACGATTAGTAGGTGACGCAGCTAAGAATCAGGCTGC 2038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267864137312060