Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq4887 96.9 2e-15 >seq4887 Length=16554 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||||| || ||| || | |||||||||||| | ||||| || | ||| | ||||| Sbjct 10776 TCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCATAGAAGAGATCGCGTGCTCTA 10717 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | ||| ||||| ||||| |||||| || || ||||| ||||| | ||| | |||||| Sbjct 10716 ACTTCCTCTTTGCCGTGGTTCTTTCGGAGGTCCAAGAACTCAAAGACATCCGCATGCCAT 10657 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 ||||| | || | ||||| ||| | || |||||||| || || ||||| Sbjct 10656 GGTTCAAGGTAAACGGCAAATGCACCAGGGCGCTTGTTACCACCTTGGTCGACATATCTA 10597 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGC 26159 || || | ||||||||| | ||| ||||| | || | || |||||||||| Sbjct 10596 GCGGTGTTGTTGAAAACTCGAAGCATAGGAACGATACCGTTAGAGTTACCGTTTGTGC 10539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253017348570875