Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rutstroemia_20echinophila_20[genbank_20GCA_5F000812885.1_202014-12- 31] 7,345 sequences; 40,250,382 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4599 154 2e-32 >seq4599 Length=27231 Score = 154 bits (170), Expect = 2e-32 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 ||||| | || |||||||| | ||||||||| || |||||| || || | ||| ||| Sbjct 13475 AGTCCTTGTGGTCCATGATAGACGGCATAGAATGCACTCATATTCGCCAGTAATGCCTGT 13416 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 ||||| || | ||| || ||||| || ||||| | || || |||||||| ||||||| Sbjct 13415 GCTGTACAAACGTTGCTAGTTGCCTTTTCTCTGCGGATGTGTTGCTCTCTTGTTTGTAAG 13356 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439 || ||||| ||| || ||| |||||| || ||| | || | || ||| Sbjct 13355 GCCAATCTCATTGCCTTGTTACCTAACCTGTCCTTGGATACACCAATGATACGCCCGGGT 13296 Query 139440 ATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCC 139499 |||||||||||||| ||||| | ||||||||||||||||||||||| |||||||| Sbjct 13295 ATCTTTCTCTTATAGTTGTCGCTGACCGCAAAGAATGCAGCATGAGGACCCCCGTATCCA 13236 Query 139500 ATAGGAATACCAAACCTTTG 139519 | || | |||||| | ||| Sbjct 13235 AATGGTACACCAAAACGTTG 13216 Score = 127 bits (140), Expect = 2e-24 Identities = 272/394 (69%), Gaps = 13/394 (3%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| || ||||| || || || ||||| ||||||||||| ||||| || Sbjct 14618 ACACCAATGGGACCAACACCAGGTCCACCGCCGCCATGAGGAATACAGAAGGTCTTGTGA 14559 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | ||| ||||| || ||||| || ||| |||| ||| || || | ||| ||| Sbjct 14558 AGATTAAGATGGCAGACATCGGCGCCAATCTCACCAGGTGAGCAAAGGCCAATCTGAGCA 14499 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | |||||| ||||| |||| | ||||| || | ||| | | Sbjct 14498 TTCATGTTGGCACCGTCCATATATACTTGACCGCCATGTTGGTGAACAATATCACA-AGC 14440 Query 138363 TG-TCTGATGTTTGTTTCAAATACACC--ATGAGTCGATGGATATGTAATCATAATACAT 138419 | | |||| | | ||| |||||||| ||| | | | |||||||| ||||||||| | Sbjct 14439 GGCTTTGATTTCCGGTTCGAATACACCGAATGTG-CTA-GGATATGTGATCATAATAGCT 14382 Query 138420 GAGAGTTC--AAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGC 138477 |||||| |||||| | ||| || || ||| | || || | ||| | Sbjct 14381 CCGAGTTCCTCGCTGTATTTCT-CGCACTTAGCCTTCAAG-TCTGTCATATCCAGGTTCC 14324 Query 138478 C-ATCATCA--TCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534 | | | | ||||| || || |||||| ||||||||||||| | || ||||| Sbjct 14323 CTGACTTGATGTCACATTTCACGGTGACAACTCGCATTCCTGCCATGGCAGCTGAAGCAG 14264 Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACA 138568 | || || || || |||||| |||| |||| ||| Sbjct 14263 GGTTGGTACCGTGAGCTGACACTGGAATCAAACA 14230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578945240709400